BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015137
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-li...   196   2e-48
ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-li...   194   6e-48
ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana] gi...   191   7e-47
ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis ...   190   1e-46
dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila]     188   4e-46

>ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 947

 Score =  196 bits (498), Expect = 2e-48
 Identities = 100/124 (80%), Positives = 104/124 (83%)
 Frame = +2

Query: 2   ERKDPPHKGEKEVPEGAPDCLAGLTFVMTGTLDSLEREEAEVLIKRHGGRVTGSVSKKTN 181
           ERKDPPHKGEKEVPEGAPDCLAGLTFV++GTLDSLEREEAE LIKRHGGRVTGSVSKKTN
Sbjct: 175 ERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 234

Query: 182 YLLVDEDIGGRKSEKAKELGTTFLNEDGLFDIIRKSKPTKTIPPADTKTKTVEKAAASQP 361
           YLL DEDIGGRKSEKAKELGT+FL EDGLFD+IR SKP K     D K      A ASQ 
Sbjct: 235 YLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKASSQEDKKLVNKAVAVASQS 294

Query: 362 KGSP 373
           K SP
Sbjct: 295 KVSP 298


>ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 1112

 Score =  194 bits (493), Expect = 6e-48
 Identities = 99/124 (79%), Positives = 104/124 (83%)
 Frame = +2

Query: 2   ERKDPPHKGEKEVPEGAPDCLAGLTFVMTGTLDSLEREEAEVLIKRHGGRVTGSVSKKTN 181
           ERKDPPHKGEKEVPEGAPDCLAGLTFV++GTLDSLEREEAE LIKRHGGRVTGSVSKKTN
Sbjct: 342 ERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 401

Query: 182 YLLVDEDIGGRKSEKAKELGTTFLNEDGLFDIIRKSKPTKTIPPADTKTKTVEKAAASQP 361
           YLL DEDIGGRKSEKAK+LGT+FL EDGLFD+IR SKP K     D K      A ASQ 
Sbjct: 402 YLLCDEDIGGRKSEKAKQLGTSFLTEDGLFDMIRGSKPAKAPSQEDKKPVNKAVAVASQS 461

Query: 362 KGSP 373
           K SP
Sbjct: 462 KVSP 465


>ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana]
           gi|13374860|emb|CAC34494.1| replication factor C large
           subunit-like protein [Arabidopsis thaliana]
           gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis
           thaliana] gi|332005585|gb|AED92968.1| replication factor
           C1 [Arabidopsis thaliana]
          Length = 956

 Score =  191 bits (484), Expect = 7e-47
 Identities = 100/130 (76%), Positives = 105/130 (80%)
 Frame = +2

Query: 2   ERKDPPHKGEKEVPEGAPDCLAGLTFVMTGTLDSLEREEAEVLIKRHGGRVTGSVSKKTN 181
           ERKDPPHKGEKEVPEG PDCLAGLTFV++GTLDSLEREEAE LIKRHGGR+TGSVSKKT 
Sbjct: 187 ERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTT 246

Query: 182 YLLVDEDIGGRKSEKAKELGTTFLNEDGLFDIIRKSKPTKTIPPADTKTKTVEKAAASQP 361
           YLL DEDIGGRKSEKAKELGT FL EDGLFDIIR SKP K   P +   K  EK  A  P
Sbjct: 247 YLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIRSSKPVKKSLP-ERSNKGTEKICA-PP 304

Query: 362 KGSPLKLEAK 391
           K SP K E +
Sbjct: 305 KTSPQKEETR 314


>ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319877|gb|EFH50299.1| AAA-type ATPase family
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 960

 Score =  190 bits (482), Expect = 1e-46
 Identities = 100/130 (76%), Positives = 105/130 (80%)
 Frame = +2

Query: 2   ERKDPPHKGEKEVPEGAPDCLAGLTFVMTGTLDSLEREEAEVLIKRHGGRVTGSVSKKTN 181
           ERKDPPHKGEKEVPEG PDCLAGLTFV++GTLDSLEREEAE LIKRHGGR+TGSVSKKT 
Sbjct: 191 ERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTT 250

Query: 182 YLLVDEDIGGRKSEKAKELGTTFLNEDGLFDIIRKSKPTKTIPPADTKTKTVEKAAASQP 361
           YLL DEDIGGRKSEKAKELGT FL EDGLFD+IR SKP K   P  T  K  EK  A  P
Sbjct: 251 YLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRSSKPVKKSLPERT-NKGTEKICA-PP 308

Query: 362 KGSPLKLEAK 391
           K SP K E +
Sbjct: 309 KTSPQKEETR 318


>dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila]
          Length = 933

 Score =  188 bits (477), Expect = 4e-46
 Identities = 101/130 (77%), Positives = 106/130 (81%)
 Frame = +2

Query: 2   ERKDPPHKGEKEVPEGAPDCLAGLTFVMTGTLDSLEREEAEVLIKRHGGRVTGSVSKKTN 181
           ERKDPPHKGEKEVPEG PDCLAGLTFV++GTLDSLEREEAE LIKRHGGRVTGSVSKKT 
Sbjct: 160 ERKDPPHKGEKEVPEGNPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTT 219

Query: 182 YLLVDEDIGGRKSEKAKELGTTFLNEDGLFDIIRKSKPTKTIPPADTKTKTVEKAAASQP 361
           YLL DEDIGGRKSEKAKELGT FL EDGLFD+IR SKP K   P  T  K  EK +A Q 
Sbjct: 220 YLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRSSKPVKKSLPERT-NKGTEKVSA-QL 277

Query: 362 KGSPLKLEAK 391
           K SP K E +
Sbjct: 278 KISPQKEETR 287