BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014898
         (996 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631582.1| PREDICTED: probable ribosome-binding factor ...   243   5e-62
ref|XP_002270280.1| PREDICTED: probable ribosome-binding factor ...   243   5e-62
ref|XP_002306146.1| predicted protein [Populus trichocarpa] gi|2...   239   8e-61
ref|XP_004151338.1| PREDICTED: probable ribosome-binding factor ...   239   1e-60
ref|NP_195199.2| ribosome-binding factor A [Arabidopsis thaliana...   236   5e-60

>ref|XP_003631582.1| PREDICTED: probable ribosome-binding factor A, chloroplastic
           isoform 2 [Vitis vinifera]
          Length = 215

 Score =  243 bits (620), Expect = 5e-62
 Identities = 126/141 (89%), Positives = 136/141 (96%)
 Frame = -3

Query: 844 IRCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSA 665
           +RCMAN RRVKMVAKQI+RELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDV+VSA
Sbjct: 55  VRCMANQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 114

Query: 664 DLQVVKVYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGS 485
           DLQVVKVYVSVFGDE+GKE+AIAGLKSKAKYVR ELGRR+KLRLTPEIRF+EDESLERGS
Sbjct: 115 DLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERGS 174

Query: 484 RVIAILDRLKDEKKPAEDQDR 422
           RVIAILDR+K+EKK A  QD+
Sbjct: 175 RVIAILDRIKNEKKMAGSQDQ 195


>ref|XP_002270280.1| PREDICTED: probable ribosome-binding factor A, chloroplastic
           isoform 1 [Vitis vinifera]
          Length = 223

 Score =  243 bits (620), Expect = 5e-62
 Identities = 126/141 (89%), Positives = 136/141 (96%)
 Frame = -3

Query: 844 IRCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSA 665
           +RCMAN RRVKMVAKQI+RELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDV+VSA
Sbjct: 55  VRCMANQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 114

Query: 664 DLQVVKVYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGS 485
           DLQVVKVYVSVFGDE+GKE+AIAGLKSKAKYVR ELGRR+KLRLTPEIRF+EDESLERGS
Sbjct: 115 DLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERGS 174

Query: 484 RVIAILDRLKDEKKPAEDQDR 422
           RVIAILDR+K+EKK A  QD+
Sbjct: 175 RVIAILDRIKNEKKMAGSQDQ 195


>ref|XP_002306146.1| predicted protein [Populus trichocarpa] gi|222849110|gb|EEE86657.1|
           predicted protein [Populus trichocarpa]
          Length = 166

 Score =  239 bits (610), Expect = 8e-61
 Identities = 132/166 (79%), Positives = 142/166 (85%)
 Frame = -3

Query: 835 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSADLQ 656
           MANPRRVKMVAKQIQRELSDMLLTDKVLQ+AVLPEAALGAD+YLSSLTTISDV+VSADLQ
Sbjct: 1   MANPRRVKMVAKQIQRELSDMLLTDKVLQYAVLPEAALGADKYLSSLTTISDVEVSADLQ 60

Query: 655 VVKVYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGSRVI 476
           VVKVYVSVFGD+RGKE+AIAGLKSKAKYVR +LGRR+KLRLTPEIRFIEDE LERGSRVI
Sbjct: 61  VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDEGLERGSRVI 120

Query: 475 AILDRLKDEKKPAEDQDRDEVEDESSENQXXXXXXXXXXXXDIIYV 338
           AILDR+K EK  AE Q  DE+ D S+  Q            DIIYV
Sbjct: 121 AILDRIKAEKDNAESQ-VDELSDSSNSIQYDEDWEGDDPDEDIIYV 165


>ref|XP_004151338.1| PREDICTED: probable ribosome-binding factor A, chloroplastic-like
           [Cucumis sativus] gi|449529960|ref|XP_004171965.1|
           PREDICTED: probable ribosome-binding factor A,
           chloroplastic-like [Cucumis sativus]
          Length = 225

 Score =  239 bits (609), Expect = 1e-60
 Identities = 122/145 (84%), Positives = 136/145 (93%)
 Frame = -3

Query: 844 IRCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSA 665
           IRCMAN RR+KMVAKQIQRELSDMLLTDKVLQFA+LPEA+LGAD+YLSSLTTI+DV+VSA
Sbjct: 57  IRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSA 116

Query: 664 DLQVVKVYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGS 485
           DLQVVKVYVSVFGDERGK++AIAGLKSKAKYVR  LG+R+KLRLTPEIRFIEDES ERGS
Sbjct: 117 DLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGS 176

Query: 484 RVIAILDRLKDEKKPAEDQDRDEVE 410
           RVIAILDR+KD+KK   D+D D+ E
Sbjct: 177 RVIAILDRIKDKKKDTVDEDFDQPE 201


>ref|NP_195199.2| ribosome-binding factor A [Arabidopsis thaliana]
           gi|78099793|sp|O65693.2|RBFA_ARATH RecName:
           Full=Probable ribosome-binding factor A, chloroplastic;
           Flags: Precursor gi|25082957|gb|AAN72022.1| putative
           protein [Arabidopsis thaliana]
           gi|30023650|gb|AAP13358.1| At4g34730 [Arabidopsis
           thaliana] gi|332661016|gb|AEE86416.1| ribosome-binding
           factor A [Arabidopsis thaliana]
          Length = 215

 Score =  236 bits (603), Expect = 5e-60
 Identities = 135/203 (66%), Positives = 156/203 (76%), Gaps = 11/203 (5%)
 Frame = -3

Query: 979 MPQILHHRPPLPVFPWAHHNFPPACS-------FLYKKSYKPLNLPGNNN--RIIRCMAN 827
           MP +LH       F + HH  PP  +       F + +S  P+NL  N +  R +RCMAN
Sbjct: 1   MPNLLHTNQSH--FFFLHH--PPIYTVSSKTQAFHFPQSMAPVNLRTNLSVRRTVRCMAN 56

Query: 826 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSADLQVVK 647
           PRRVKMVAKQI RELSDMLLTD VLQ AVLPEAALGADRYLSSLTTISDV+VS DLQVVK
Sbjct: 57  PRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDLQVVK 116

Query: 646 VYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGSRVIAIL 467
           VYVSVFGD+RGK++AIAGLKSKAKYVR ELG+R+KLRLTPE+RFIEDE++ERGSRVIAIL
Sbjct: 117 VYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAIL 176

Query: 466 DRLKDEKKPAE--DQDRDEVEDE 404
           D++K EK   E   +  D  ED+
Sbjct: 177 DKIKAEKGSGEGKTEPSDSTEDD 199