BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014886
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-15
emb|CBI26082.3| unnamed protein product [Vitis vinifera]               74   2e-15
ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-14
ref|XP_002330363.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-14
ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containi...    58   2e-12

>ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score = 73.6 bits (179), Expect(2) = 2e-15
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
 Frame = -1

Query: 335 VNMNLLLKIHLKPLINLSRQN----FHTNPHFIQHLQNSKTLNSIISVHPNIVKSGFLNH 168
           +N NL+ ++   P   +SRQN    FHT    IQ LQ+   + S+   H N++KSGFLN 
Sbjct: 5   LNQNLIFRV---PSTCISRQNKLSHFHTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLND 61

Query: 167 TITANHLLNAYVRLENIKDAQNLFD 93
           T T NHL+N+YVR+    DA  LF+
Sbjct: 62  TFTTNHLINSYVRIRRTNDASQLFE 86



 Score = 33.5 bits (75), Expect(2) = 2e-15
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -2

Query: 97  LTDPNVVSWTSLMSGYINSRKPQKVLGVF 11
           + +PNV+S+TSLM+G+I   +P+  L +F
Sbjct: 88  MREPNVISFTSLMAGFIKVGRPKSALLIF 116


>emb|CBI26082.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 73.6 bits (179), Expect(2) = 2e-15
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
 Frame = -1

Query: 335 VNMNLLLKIHLKPLINLSRQN----FHTNPHFIQHLQNSKTLNSIISVHPNIVKSGFLNH 168
           +N NL+ ++   P   +SRQN    FHT    IQ LQ+   + S+   H N++KSGFLN 
Sbjct: 5   LNQNLIFRV---PSTCISRQNKLSHFHTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLND 61

Query: 167 TITANHLLNAYVRLENIKDAQNLFD 93
           T T NHL+N+YVR+    DA  LF+
Sbjct: 62  TFTTNHLINSYVRIRRTNDASQLFE 86



 Score = 33.5 bits (75), Expect(2) = 2e-15
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -2

Query: 97  LTDPNVVSWTSLMSGYINSRKPQKVLGVF 11
           + +PNV+S+TSLM+G+I   +P+  L +F
Sbjct: 88  MREPNVISFTSLMAGFIKVGRPKSALLIF 116


>ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score = 67.4 bits (163), Expect(2) = 2e-14
 Identities = 40/83 (48%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
 Frame = -1

Query: 329 MNLL--LKIHLKPLINLSRQNFHTNP--HFIQHLQNSKTLNSIISVHPNIVKSGFLNHTI 162
           MNL+  L   L     LS  +FHTN   HF+  LQ  K L S  S H N+VKSG  N T 
Sbjct: 1   MNLVTSLSSSLSRQHKLSLFHFHTNTKAHFVAKLQTCKDLTSATSTHSNVVKSGLSNDTF 60

Query: 161 TANHLLNAYVRLENIKDAQNLFD 93
             NHL+N Y+RL  I  AQ LFD
Sbjct: 61  ATNHLINCYLRLFTIDHAQKLFD 83



 Score = 36.6 bits (83), Expect(2) = 2e-14
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = -2

Query: 85  NVVSWTSLMSGYINSRKPQKVLGVFEMM 2
           NVVSWTSLM+GY++  +P   L +F  M
Sbjct: 89  NVVSWTSLMAGYVSQGQPNMALCLFHQM 116


>ref|XP_002330363.1| predicted protein [Populus trichocarpa] gi|222871567|gb|EEF08698.1|
           predicted protein [Populus trichocarpa]
          Length = 584

 Score = 60.1 bits (144), Expect(2) = 2e-14
 Identities = 29/55 (52%), Positives = 35/55 (63%)
 Frame = -1

Query: 257 HFIQHLQNSKTLNSIISVHPNIVKSGFLNHTITANHLLNAYVRLENIKDAQNLFD 93
           H IQ L+N K     IS H N+ K G LN TIT NHLLN+Y+R   I+ A +LFD
Sbjct: 11  HIIQQLKNCKDFIFAISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFD 65



 Score = 43.9 bits (102), Expect(2) = 2e-14
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -2

Query: 91  DPNVVSWTSLMSGYINSRKPQKVLGVFEMM 2
           +PNVVSWTSLMSGY+N  +PQ  L ++  M
Sbjct: 69  EPNVVSWTSLMSGYVNMGRPQSALWLYTKM 98


>ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score = 57.8 bits (138), Expect(2) = 2e-12
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
 Frame = -1

Query: 287 LSRQN----FHTNPHFIQHLQNSKTLNSIISVHPNIVKSGFLNHTITANHLLNAYVRLEN 120
           LSR+N      T  +  +HL+N   L S IS H   +K GFLN+T+  NHL+N YVR  +
Sbjct: 15  LSRENERPFLQTIENLSRHLRNCNDLISSISTHSIALKLGFLNNTVNVNHLINCYVRFRS 74

Query: 119 IKDAQNLFD 93
           I  A  LFD
Sbjct: 75  IATAHQLFD 83



 Score = 38.9 bits (89), Expect(2) = 2e-12
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = -2

Query: 97  LTDPNVVSWTSLMSGYINSRKPQKVLGVFEMM 2
           + +PNVVSWTSLM+GY+++ +P   L +F  M
Sbjct: 85  MPNPNVVSWTSLMAGYVDNGQPSTALFLFGEM 116