BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014835
         (556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    80   3e-13
gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]          77   1e-12
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    73   3e-11
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    73   3e-11
emb|CAN65484.1| hypothetical protein VITISV_029474 [Vitis vinifera]    72   6e-11

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 79.7 bits (195), Expect = 3e-13
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)
 Frame = -1

Query: 547 PSTGFKFTWWNKQLGVNKVLGKLDRAFVNAD*TSSFASWRYKALGRICL-----DHSPLV 383
           P+ G  +TW N +LG + V  +LDRA  N +  + + S    ALG   L     DH PL+
Sbjct: 174 PTLGAFYTWSNGRLGSDNVALRLDRAICNEEWVNFWRSSSCSALGNSALVRHQSDHHPLL 233

Query: 382 GWCINVPKPRNAPFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXKHW 203
                    R+  F+FFK WT H     +V ++W +   GH +  L           +HW
Sbjct: 234 MSMDFCTSQRSGNFKFFKTWTEHEDCRRIVAENWSKHTRGHGMTRLQAKLKHMKQVFRHW 293

Query: 202 NKHTFGHLGTKIATKTKLLEDLQVNFELDSSNEALAGMVLQ*ESKVENLLQQEEMLWKQK 23
           N+  FG +  K+    + +  +Q   +    ++ L    L+    +   L  ++ LW++K
Sbjct: 294 NRTVFGDVDRKVRMAVEEVNRIQQIIDSVGFSDQLYAQELEAHLILTKALHYQDELWREK 353

Query: 22  SR 17
            R
Sbjct: 354 LR 355


>gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 1613

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 54/174 (31%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
 Frame = -1

Query: 538  GFKFTWWNKQLGVNKVLGKLDRAFVNAD*TSSFASWRYKALGRICLDHSPLVGWCINVPK 359
            G +F+W+ +      V  KLDR  +N    S F     + L R+  DH P++  C   P+
Sbjct: 576  GRQFSWYRRVKNYVDVAKKLDRVCINNSWLSIFPEAYAEVLNRLQSDHCPILVRCKGRPQ 635

Query: 358  PR-NAPFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXKHWNKHTFGH 182
            P+ N PFRF   W THPG+ ++V QSW     G     +             +N   FG+
Sbjct: 636  PKGNRPFRFIAAWATHPGYRDIVNQSWWSGNRG-----IHGKLSEVQKNSLEFNSKVFGN 690

Query: 181  LGTKIATKTKLLEDLQVNFELDSSNEALAGMVLQ*ESKVENLLQQEEMLWKQKS 20
            +  K     + +  LQ   E+  S   L     Q      N L QEE+LW QKS
Sbjct: 691  IFVKKCELEQQINYLQKRLEVVDS-IYLRQKERQLLDDYNNTLVQEELLWFQKS 743


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
 Frame = -1

Query: 538 GFKFTWWNKQLGVNKVLGKLDRAFVNAD*TSSFASWRYKALGRICLDHSPLVGWCINVPK 359
           G KFTW N + G + +  +LDRA VN++    F   +   L R   DH PL+      P+
Sbjct: 179 GPKFTWTNGRTGGSLIKERLDRALVNSEWLDLFPDTKVIHLPRTFSDHCPLLILFNENPR 238

Query: 358 PRNAPFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXKHWNKHTFGHL 179
             + PFR  ++W  HP F  ++E++WG   + H+ ++  +         K W+K+ FG +
Sbjct: 239 SESFPFRCKEVWAYHPDFTNVIEETWG---SHHNSYVAAR--DLFLSSVKSWSKYVFGSI 293

Query: 178 GTKIATKTKLLEDLQVNFELDSSNEALAGMVLQ*ESKVENLLQQEEMLWKQKS---RAKM 8
             K       L  +Q +  +  S   L+ + +    ++  L +QE + W QK+   RAK+
Sbjct: 294 FQKKKRILARLGGIQKSLSIHPS-VFLSKLEIDLLVELNELSKQERVFWAQKAGIDRAKL 352


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 51/180 (28%), Positives = 77/180 (42%)
 Frame = -1

Query: 553 EAPSTGFKFTWWNKQLGVNKVLGKLDRAFVNAD*TSSFASWRYKALGRICLDHSPLVGWC 374
           E   TG  FTW  K+ G N +  +LDR   +      F     K       DH  +    
Sbjct: 177 EISFTGQIFTWRKKKDGPNNIHERLDRGVASTSWLMLFPHAFLKHHIFTSSDHCQISLEY 236

Query: 373 INVPKPRNAPFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXKHWNKH 194
           +   K +  PFRF KMW T   +  LV+++W     G  +F   Q         K WNK 
Sbjct: 237 LANNKSKAPPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLVKINSKEWNKT 296

Query: 193 TFGHLGTKIATKTKLLEDLQVNFELDSSNEALAGMVLQ*ESKVENLLQQEEMLWKQKSRA 14
            FG++  ++    + LE++Q N  +D +N +L        +K   LL+     WKQK ++
Sbjct: 297 QFGNIFRQLRQVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLEYNTTYWKQKCKS 356


>emb|CAN65484.1| hypothetical protein VITISV_029474 [Vitis vinifera]
          Length = 1882

 Score = 72.0 bits (175), Expect = 6e-11
 Identities = 65/191 (34%), Positives = 85/191 (44%), Gaps = 9/191 (4%)
 Frame = -1

Query: 556  IEAPSTGFKFTWWNKQLGVNKVLGKLDRAFVNAD*TSSFASWRYKALGRICLDHSPLVGW 377
            I+ P     FTW N Q  VN V  +LDR   + +   +F       L R   DH P+V  
Sbjct: 836  IDLPLRSASFTWSNMQ--VNXVCKRLDRFLYSNEWEQAFPQSIQGVLPRWTSDHWPIV-L 892

Query: 376  CINVPKPRNAPFRFFKMWTTHPGFMELVEQSW----GESITGHSIFILTQXXXXXXXXXK 209
              N  K    PFRF  MW  HP F E   + W    G    GH      Q          
Sbjct: 893  ETNPFKWGPTPFRFENMWLQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKV-- 950

Query: 208  HWNKHTFGHLGTKIATKTKLLEDLQVNF-----ELDSSNEALAGMVLQ*ESKVENLLQQE 44
             WNK +FG L  +   K  +L DL VNF     E   S+E LA   L+ + ++E L+ +E
Sbjct: 951  -WNKASFGELSKR---KEDILSDL-VNFDSLEQEGGLSHELLAQRALK-KGELEELILRE 1004

Query: 43   EMLWKQKSRAK 11
            E+ W+QK+R K
Sbjct: 1005 EIHWRQKARVK 1015