BLASTX nr result
ID: Coptis23_contig00014824
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00014824
(698 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003545739.1| PREDICTED: protein strawberry notch-like [Gl... 310 1e-86
ref|XP_003634816.1| PREDICTED: protein strawberry notch-like [Vi... 300 2e-83
ref|XP_004139916.1| PREDICTED: protein strawberry notch-like [Cu... 287 8e-80
ref|XP_002889240.1| EMB1135 [Arabidopsis lyrata subsp. lyrata] g... 285 2e-78
ref|NP_178053.4| RING/FYVE/PHD zinc finger domain-containing pro... 285 2e-78
>ref|XP_003545739.1| PREDICTED: protein strawberry notch-like [Glycine max]
Length = 1252
Score = 310 bits (794), Expect(2) = 1e-86
Identities = 152/215 (70%), Positives = 166/215 (77%), Gaps = 2/215 (0%)
Frame = +3
Query: 3 GIDPSKIQIPCANCKAILNVPHGLSRFVCPQCGIDLAVDVSKLSNNNKHFXXXXXXXXXX 182
GIDP+KIQ+PCA+CKAILNVPHGL+RF CPQCG++LAVDVSK+ KHF
Sbjct: 94 GIDPTKIQLPCASCKAILNVPHGLARFACPQCGVELAVDVSKV----KHFFPVQEEVNEV 149
Query: 183 XXXXXXXX--GGTAGDTFTEYRPPKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIRNQL 356
GG G+TFT+YRPPK+SIGPPHPDP+VETSSLSAVQPPEPTYDPKI++ L
Sbjct: 150 AVEVERDEDEGGMVGETFTDYRPPKISIGPPHPDPVVETSSLSAVQPPEPTYDPKIKDDL 209
Query: 357 ESSNVLSCLQIETIVYACQRHLQKLENGTRXXXXXXXXXXXXXXRTIAGLIWENWHHGRR 536
ESS LSCLQIET+VYACQRHLQ L NG R RTIAGLIWENWHH RR
Sbjct: 210 ESSKALSCLQIETLVYACQRHLQHLSNGARAGFFIGDGAGVGKGRTIAGLIWENWHHYRR 269
Query: 537 KALWISVGSDLKFDARRDLDDVGAMCIEVHALNKL 641
KALWISVGSDLKFDARRDLDDVGA CIEVHALNKL
Sbjct: 270 KALWISVGSDLKFDARRDLDDVGATCIEVHALNKL 304
Score = 36.2 bits (82), Expect(2) = 1e-86
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 646 YSKLDSKSVGVREGVIF 696
YSKLDSKSVGVREGV+F
Sbjct: 306 YSKLDSKSVGVREGVVF 322
>ref|XP_003634816.1| PREDICTED: protein strawberry notch-like [Vitis vinifera]
Length = 1242
Score = 300 bits (767), Expect(2) = 2e-83
Identities = 151/218 (69%), Positives = 163/218 (74%), Gaps = 5/218 (2%)
Frame = +3
Query: 3 GIDPSKIQIPCANCKAILNVPHGLSRFVCPQCGIDLAVDVSKLSNNNKHFXXXXXXXXXX 182
GIDP+KIQ+PCA+CKAILNVPHGLSRF CPQCGIDLAVDVSKL K F
Sbjct: 74 GIDPTKIQLPCAHCKAILNVPHGLSRFACPQCGIDLAVDVSKL----KQFFPPRPPPEEV 129
Query: 183 XXXXXXXX-----GGTAGDTFTEYRPPKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIR 347
GG G+TFT+YRPPKLSIGPPHPD +VETSSLSAVQPPEPTYD KI+
Sbjct: 130 NEVAIEVEREEDEGGMVGETFTDYRPPKLSIGPPHPDHVVETSSLSAVQPPEPTYDLKIK 189
Query: 348 NQLESSNVLSCLQIETIVYACQRHLQKLENGTRXXXXXXXXXXXXXXRTIAGLIWENWHH 527
+ LESSN LSCLQIET+VYACQRHL L++G R RTIAGLIWENWHH
Sbjct: 190 DDLESSNALSCLQIETLVYACQRHLHHLQSGARAGFFIGDGAGVGKGRTIAGLIWENWHH 249
Query: 528 GRRKALWISVGSDLKFDARRDLDDVGAMCIEVHALNKL 641
G RKALWISVGSDLKFDARRDLDDVGA +EVHALNKL
Sbjct: 250 GMRKALWISVGSDLKFDARRDLDDVGATSVEVHALNKL 287
Score = 36.2 bits (82), Expect(2) = 2e-83
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 646 YSKLDSKSVGVREGVIF 696
YSKLDSKSVGVREGV+F
Sbjct: 289 YSKLDSKSVGVREGVVF 305
>ref|XP_004139916.1| PREDICTED: protein strawberry notch-like [Cucumis sativus]
Length = 1267
Score = 287 bits (735), Expect(2) = 8e-80
Identities = 141/214 (65%), Positives = 158/214 (73%), Gaps = 1/214 (0%)
Frame = +3
Query: 3 GIDPSKIQIPCANCKAILNVPHGLSRFVCPQCGIDLAVDVSKLSNN-NKHFXXXXXXXXX 179
GIDP+K+Q+PCANCKA+LNVPHGL+RFVCPQC +DLAVDVSKL
Sbjct: 99 GIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEVA 158
Query: 180 XXXXXXXXXGGTAGDTFTEYRPPKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIRNQLE 359
GGT G+TFTEY PPKLSIGP HPDP+VETSSL+AVQPPEPTY KI++ LE
Sbjct: 159 IEVEREEDEGGTVGETFTEYHPPKLSIGPLHPDPVVETSSLAAVQPPEPTYHLKIKDDLE 218
Query: 360 SSNVLSCLQIETIVYACQRHLQKLENGTRXXXXXXXXXXXXXXRTIAGLIWENWHHGRRK 539
S LSCLQIET+VYA QRH+ L N TR RTIAGL+WENWHHGRRK
Sbjct: 219 KSKALSCLQIETLVYASQRHMHHLPNDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRK 278
Query: 540 ALWISVGSDLKFDARRDLDDVGAMCIEVHALNKL 641
+LWISVGSDLK+DARRDLDDVGA CI+VHALNKL
Sbjct: 279 SLWISVGSDLKYDARRDLDDVGAACIKVHALNKL 312
Score = 36.2 bits (82), Expect(2) = 8e-80
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 646 YSKLDSKSVGVREGVIF 696
YSKLDSKSVG+REGVIF
Sbjct: 314 YSKLDSKSVGIREGVIF 330
>ref|XP_002889240.1| EMB1135 [Arabidopsis lyrata subsp. lyrata]
gi|297335081|gb|EFH65499.1| EMB1135 [Arabidopsis lyrata
subsp. lyrata]
Length = 1299
Score = 285 bits (730), Expect(2) = 2e-78
Identities = 144/229 (62%), Positives = 163/229 (71%), Gaps = 16/229 (6%)
Frame = +3
Query: 3 GIDPSKIQIPCANCKAILNVPHGLSRFVCPQCGIDLAVDVSKLSNN----NKHFXXXXXX 170
GIDP+K+Q+PCANC+AILNVPHGL+RF CPQC ++LAVDVSKL+ + H
Sbjct: 111 GIDPTKMQLPCANCQAILNVPHGLTRFSCPQCHVELAVDVSKLNRSLTAPQSHPNPPTPT 170
Query: 171 XXXXXXXXXXXX------------GGTAGDTFTEYRPPKLSIGPPHPDPIVETSSLSAVQ 314
GGTAG+TF +YRPPKLSIGPPHPDPIVETSSLSAVQ
Sbjct: 171 PAPPPPPPEEVNEEAIEVEREEDEGGTAGETFMDYRPPKLSIGPPHPDPIVETSSLSAVQ 230
Query: 315 PPEPTYDPKIRNQLESSNVLSCLQIETIVYACQRHLQKLENGTRXXXXXXXXXXXXXXRT 494
PPEPTYD KI+ +LE S LSCLQIET+VYACQRHLQ L +GTR RT
Sbjct: 231 PPEPTYDLKIKEELERSKALSCLQIETLVYACQRHLQHLADGTRAGFFVGDGAGVGKGRT 290
Query: 495 IAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAMCIEVHALNKL 641
IAGLIWENW HGRRKALWIS+GSDLK+DARRDLDDVGA C+ V+ LNKL
Sbjct: 291 IAGLIWENWKHGRRKALWISIGSDLKYDARRDLDDVGATCVGVNPLNKL 339
Score = 33.5 bits (75), Expect(2) = 2e-78
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 646 YSKLDSKSVGVREGVIF 696
YSKLDSK+VG++EGV+F
Sbjct: 341 YSKLDSKNVGIKEGVVF 357
>ref|NP_178053.4| RING/FYVE/PHD zinc finger domain-containing protein [Arabidopsis
thaliana] gi|332198112|gb|AEE36233.1| RING/FYVE/PHD zinc
finger domain-containing protein [Arabidopsis thaliana]
Length = 1295
Score = 285 bits (730), Expect(2) = 2e-78
Identities = 144/231 (62%), Positives = 163/231 (70%), Gaps = 18/231 (7%)
Frame = +3
Query: 3 GIDPSKIQIPCANCKAILNVPHGLSRFVCPQCGIDLAVDVSKLSNN----NKHFXXXXXX 170
GIDP+K+Q+PCANC+AILNVPHGL+RF CPQC ++LAVDVSKL+ + H
Sbjct: 107 GIDPTKMQLPCANCQAILNVPHGLTRFSCPQCHVELAVDVSKLNRSLTASQSHSNPPTPA 166
Query: 171 XXXXXXXXXXXX--------------GGTAGDTFTEYRPPKLSIGPPHPDPIVETSSLSA 308
GGTAG+TF +YRPPKLSIGPPHPDPIVETSSLSA
Sbjct: 167 APTVPPPPPPEEVNEEAIEVEREEDEGGTAGETFMDYRPPKLSIGPPHPDPIVETSSLSA 226
Query: 309 VQPPEPTYDPKIRNQLESSNVLSCLQIETIVYACQRHLQKLENGTRXXXXXXXXXXXXXX 488
VQPPEPTYD KI+ +LE S LSCLQIET+VYACQRHLQ L +GTR
Sbjct: 227 VQPPEPTYDLKIKEELERSKALSCLQIETLVYACQRHLQHLADGTRAGFFVGDGAGVGKG 286
Query: 489 RTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAMCIEVHALNKL 641
RTIAGLIWENW HGRRKALWIS+GSDLK+DARRDLDDVGA C+ V+ LNKL
Sbjct: 287 RTIAGLIWENWKHGRRKALWISIGSDLKYDARRDLDDVGATCVGVNPLNKL 337
Score = 33.5 bits (75), Expect(2) = 2e-78
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 646 YSKLDSKSVGVREGVIF 696
YSKLDSK+VG++EGV+F
Sbjct: 339 YSKLDSKNVGIKEGVVF 355