BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014817
         (711 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06506.1| RNA polymerase [Elaeis guineensis]                     185   7e-45
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   180   3e-43
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   179   6e-43
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I...   179   6e-43
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   179   6e-43

>gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
          Length = 145

 Score =  185 bits (470), Expect = 7e-45
 Identities = 94/143 (65%), Positives = 114/143 (79%), Gaps = 2/143 (1%)
 Frame = -2

Query: 674 EAIFDEIFTVDKMDPDGKKFDKVSRIEASVEQSAIKMQLDVNTEIYRIGVNDKFTMMLAS 495
           E +F++IFT+ ++DPDGKKFDKVSRIEA  EQ  + MQLDVNTEIY + V DKFTM+LA 
Sbjct: 3   ELLFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVLAP 62

Query: 494 TLSSDGTPDTGYFTQGGRKTLADKYEYVMHGKLYKITD--GAPGTIVDVYASFGGLLMKL 321
           TLS DGTPD+GY+ QG RK+LADK+EYVMHGKLYKI++    P   V++YASFGGLLM L
Sbjct: 63  TLSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEESSGPNVKVEIYASFGGLLMML 122

Query: 320 SVPVAHAAKCELDQRLFLLMKKV 252
               ++A   ELDQRLFLLM+KV
Sbjct: 123 KGDPSNATNFELDQRLFLLMRKV 145


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  180 bits (456), Expect = 3e-43
 Identities = 92/145 (63%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
 Frame = -2

Query: 677 AEAIFDEIFTVDKMDPDGKKFDKVSRIEASVEQSAIKMQLDVNTEIYRIGVNDKFTMMLA 498
           AE +F++IF V+++DPDGKKFD+V+RIEA  EQ  + MQLDV T +Y +   DKFTM+LA
Sbjct: 2   AEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVLA 61

Query: 497 STLSSDGTPDTGYFTQGGRKTLADKYEYVMHGKLYKITD---GAPGTIVDVYASFGGLLM 327
            TL+ DGTPDTGY+TQ GRKTLADKY+YVMHGKLYKI++   G     V+ YASFGGLLM
Sbjct: 62  PTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLLM 121

Query: 326 KLSVPVAHAAKCELDQRLFLLMKKV 252
            L    + AA  ELDQRLFLLM+KV
Sbjct: 122 LLKGDPSSAANLELDQRLFLLMRKV 146


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  179 bits (453), Expect = 6e-43
 Identities = 90/144 (62%), Positives = 113/144 (78%), Gaps = 3/144 (2%)
 Frame = -2

Query: 674 EAIFDEIFTVDKMDPDGKKFDKVSRIEASVEQSAIKMQLDVNTEIYRIGVNDKFTMMLAS 495
           E +F++IFTV ++DPDGKKFD+VSRIEA  EQ  + MQLDV TE+Y +   D+FTM+LA 
Sbjct: 253 EHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAP 312

Query: 494 TLSSDGTPDTGYFTQGGRKTLADKYEYVMHGKLYKITD---GAPGTIVDVYASFGGLLMK 324
           TL+ DGTPDTG++TQ GRKTLADK++YVMHGKLYKI++       T V++YASFGGLLM 
Sbjct: 313 TLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMM 372

Query: 323 LSVPVAHAAKCELDQRLFLLMKKV 252
           L    + AA  ELDQRLFLL++KV
Sbjct: 373 LKGDPSSAASFELDQRLFLLIRKV 396


>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 144

 Score =  179 bits (453), Expect = 6e-43
 Identities = 92/145 (63%), Positives = 113/145 (77%), Gaps = 3/145 (2%)
 Frame = -2

Query: 677 AEAIFDEIFTVDKMDPDGKKFDKVSRIEASVEQSAIKMQLDVNTEIYRIGVNDKFTMMLA 498
           AE +F++IF V ++DPDGKKFD+V+RIEA  EQ  + MQLDV T++Y +   DKFTM+LA
Sbjct: 2   AEHLFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVLA 59

Query: 497 STLSSDGTPDTGYFTQGGRKTLADKYEYVMHGKLYKITD---GAPGTIVDVYASFGGLLM 327
            TL+ DGTPDTGY+TQ GRKTLADKY+YVMHGKLYKI++   G     V++YASFGGLLM
Sbjct: 60  PTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLLM 119

Query: 326 KLSVPVAHAAKCELDQRLFLLMKKV 252
            L    + AA  ELDQRLFLLM+KV
Sbjct: 120 LLKGDPSSAANLELDQRLFLLMRKV 144


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  179 bits (453), Expect = 6e-43
 Identities = 90/144 (62%), Positives = 113/144 (78%), Gaps = 3/144 (2%)
 Frame = -2

Query: 674 EAIFDEIFTVDKMDPDGKKFDKVSRIEASVEQSAIKMQLDVNTEIYRIGVNDKFTMMLAS 495
           E +F++IFTV ++DPDGKKFD+VSRIEA  EQ  + MQLDV TE+Y +   D+FTM+LA 
Sbjct: 48  EHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAP 107

Query: 494 TLSSDGTPDTGYFTQGGRKTLADKYEYVMHGKLYKITD---GAPGTIVDVYASFGGLLMK 324
           TL+ DGTPDTG++TQ GRKTLADK++YVMHGKLYKI++       T V++YASFGGLLM 
Sbjct: 108 TLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMM 167

Query: 323 LSVPVAHAAKCELDQRLFLLMKKV 252
           L    + AA  ELDQRLFLL++KV
Sbjct: 168 LKGDPSSAASFELDQRLFLLIRKV 191