BLASTX nr result
ID: Coptis23_contig00014812
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00014812
(1083 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 131 3e-28
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm... 120 6e-25
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 117 6e-24
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 116 8e-24
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 115 1e-23
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 131 bits (330), Expect = 3e-28
Identities = 98/343 (28%), Positives = 167/343 (48%), Gaps = 16/343 (4%)
Frame = -3
Query: 1045 WSSLPKELLELIALCLMTDVTDYVRFGVVCKLWWSVFVAIKPPRKLPPQIPWLLINDENL 866
WS LP EL+E+I+ L T +DY+ VC W F K P LPPQ+PWL++
Sbjct: 5 WSQLPPELIEIISKGL-TIYSDYLYSRAVCHAWR--FSIPKTPNHLPPQLPWLMLPQSQS 61
Query: 865 GT-----CFFSPSLNRRIWLKTPN-PHTHDCIGSNIGWLIMIGKNSPSMFLLNPLTEAKI 704
+ FFS S N+ +L P + GS+ GWL MI ++P++ L+NPLT AK+
Sbjct: 62 QSNQSRRAFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWL-MILDDTPTILLINPLTRAKL 120
Query: 703 FLPPATEISWMVDYQPSRIDTEYAVELFEYLGGVVHDYMFIPSRQVTRSLKLRAELSSHP 524
LPP + ++ + S I EYA L ++ + + + RQ+ S + LSS P
Sbjct: 121 SLPPLSSFPNVISFNYSDIGREYA------LRNLLGERVTVSLRQMRDSFIRKVVLSSSP 174
Query: 523 TLFSMEGDRCVVLLLSGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQF 344
++ + VV+ + A+C GD W ++V+N + C D+ + +G F
Sbjct: 175 ----LKDNNFVVIAILNQTDDLAYCRNGDKSW-SLVENAR-------SFCEDVIFVNGMF 222
Query: 343 YVADRSSRVVVCDVGPPYPGTKQFATMNSYHQLYTEYARLVELSGELLFIIPRLRPFKYT 164
Y +++ ++V+CD+ P + + M + Q + LV SG+ L ++ R +Y
Sbjct: 223 YAVNKAGQIVICDISSDSP---RVSFMETPRQAGGDMQYLVN-SGDELLLVTRYLDLEY- 277
Query: 163 NSEYP----------MGFRIFKLCQDSKEWVEVKNIGGATLFV 65
++P + F +F+L + +W+ + +G LF+
Sbjct: 278 EFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFI 320
>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
gi|223551309|gb|EEF52795.1| conserved hypothetical
protein [Ricinus communis]
Length = 406
Score = 120 bits (301), Expect = 6e-25
Identities = 97/341 (28%), Positives = 156/341 (45%), Gaps = 14/341 (4%)
Frame = -3
Query: 1045 WSSLPKELLELIALCLMTDVTDYVRFGVVCKLWWSVFVAIKPPRKLPPQIPWLLI----- 881
WS LP+ELL+ I ++ DY+ VCK WWS K P L Q+PWLL+
Sbjct: 4 WSELPQELLQTITQ-KQSNYVDYISTRAVCKSWWSAIP--KKPHDLLCQLPWLLLPYHKN 60
Query: 880 NDENLGTCFFSPSLNRRIWLKTPNPHTHDCIGSNIGWLIMIGKNSPSMFLLNPLTEAKIF 701
N + G F++ + + L+ P C GS+ GWL+M+ +++PS+FLLNPLT+A+I
Sbjct: 61 NPNHRG--FYNLADGKTYHLELPETIEKRCCGSSHGWLVMV-EDTPSIFLLNPLTKARIE 117
Query: 700 LPPATEISWMVDYQPSRIDTEYAVELFEYLGGVVHDYMFIPSRQVTRSLKLRAELSSHPT 521
LP + Y P+ + E + + EY ++ + +A +S P+
Sbjct: 118 LPSLSTF----PYFPTEVVYENSRNINEYFNTKA-------KLRIRETYIRKAIVSEDPS 166
Query: 520 LFSMEGDRCVVLLLSGL--VRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQ 347
G+ V+ + + AFC GD W TI + + + +D+ +H G+
Sbjct: 167 ----TGNFAVMAIYKTINSTENIAFCKSGDATWFTIQETSQKIH------YQDVMFHRGK 216
Query: 346 FYVADRSSRVVVC--DVGPP----YPGTKQFATMNSYHQLYTEYARLVELSGELLFIIPR 185
FY D RV +C D+ PP + Y Q Y L L +L+ + R
Sbjct: 217 FYAVDDKGRVSICITDINPPSVIQVADPPPVPPLMGYKQWY-----LASLDEDLI-LAGR 270
Query: 184 LRPFKYTNSEYPM-GFRIFKLCQDSKEWVEVKNIGGATLFV 65
R ++ + EY F ++KL S W+E+ +G F+
Sbjct: 271 FRKYRGSGYEYQTHKFMVYKLDASSSNWLELDGLGDMLSFL 311
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 117 bits (292), Expect = 6e-24
Identities = 100/341 (29%), Positives = 154/341 (45%), Gaps = 14/341 (4%)
Frame = -3
Query: 1045 WSSLPKELLELIALCLMTDVTDYVRFGVVCKLWWSVFVAIKPPRKLPPQIPWLLI---ND 875
WS L ELL+ IA TDYVRF VC W + K P LP Q+PWL++
Sbjct: 4 WSQLHPELLDFIAKKFKI-YTDYVRFRAVCHNWRASVP--KTPHHLPTQLPWLMLPQSQP 60
Query: 874 ENLGTCFFSPSLNRRIWLKTPNP-HTHDCIGSNIGWLIMIGKNSPSMFLLNPLTEAKIFL 698
+ FFS SLN+ +L+ P H GS+ GWL+++ + +P +FLLNPLT +K+ L
Sbjct: 61 HHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDE-APEIFLLNPLTRSKVHL 119
Query: 697 PPATEISWMVDYQPSRIDTEYAVELFEYLGGVVHDYMFIPSRQVTRSLKLRAELSSHPTL 518
PP + +V + + + EYA+ G V+ TRSLK + T+
Sbjct: 120 PPLSTFPNVVRFNFADVGREYALRT---SSGDVY----------TRSLKKMRDSFIKKTI 166
Query: 517 FS---MEGDRCVVLLLSGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQ 347
S G + +++ A C D+ WT + D + + D+ +H G
Sbjct: 167 LSSSPANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQ--------SYSEDVIFHRGL 218
Query: 346 FYVADRSSRVVVCDVGPPYPGTKQFATMNSYHQLYTEYARLVELSGELLFIIPRLRPFKY 167
FY ++ + VCDV P + + + Q + LVE SGE L ++ R Y
Sbjct: 219 FYAVNKYGSIAVCDVSGSSP---RVSIIEMPQQFGGDLQYLVE-SGEELLLVTRYLDLTY 274
Query: 166 ------TNSEY-PMGFRIFKLCQDSKEWVEVKNIGGATLFV 65
T+ Y F++ +L + W V ++G LF+
Sbjct: 275 DVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFL 315
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 116 bits (291), Expect = 8e-24
Identities = 100/341 (29%), Positives = 154/341 (45%), Gaps = 14/341 (4%)
Frame = -3
Query: 1045 WSSLPKELLELIALCLMTDVTDYVRFGVVCKLWWSVFVAIKPPRKLPPQIPWLLI---ND 875
WS L ELL+ IA TDYVRF VC W + K P LP Q+PWL++
Sbjct: 4 WSQLHPELLDFIAKKFKI-YTDYVRFRAVCHNWRASVP--KTPHHLPTQLPWLMLPQSQP 60
Query: 874 ENLGTCFFSPSLNRRIWLKTPNP-HTHDCIGSNIGWLIMIGKNSPSMFLLNPLTEAKIFL 698
+ FFS SLN+ +L+ P H GS+ GWL+++ + +P +FLLNPLT +K+ L
Sbjct: 61 HHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDE-APEIFLLNPLTRSKVHL 119
Query: 697 PPATEISWMVDYQPSRIDTEYAVELFEYLGGVVHDYMFIPSRQVTRSLKLRAELSSHPTL 518
PP + +V + + + EYA+ G V+ TRSLK + T+
Sbjct: 120 PPLSTFPNVVRFNFADVGREYALRT---SSGDVY----------TRSLKKMRDSFIKKTI 166
Query: 517 FS---MEGDRCVVLLLSGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQ 347
S G + +++ A C D+ WT + D + + D+ +H G
Sbjct: 167 LSSSPANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQ--------SYAEDVIFHRGL 218
Query: 346 FYVADRSSRVVVCDVGPPYPGTKQFATMNSYHQLYTEYARLVELSGELLFIIPRLRPFKY 167
FY ++ + VCDV P + + + Q + LVE SGE L ++ R Y
Sbjct: 219 FYAVNKYGSIAVCDVSGSSP---RVSIIEMPQQFGGDLQYLVE-SGEELLLVTRYLDLTY 274
Query: 166 ------TNSEY-PMGFRIFKLCQDSKEWVEVKNIGGATLFV 65
T+ Y F++ +L + W V ++G LF+
Sbjct: 275 DVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFL 315
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 115 bits (289), Expect = 1e-23
Identities = 97/339 (28%), Positives = 156/339 (46%), Gaps = 12/339 (3%)
Frame = -3
Query: 1045 WSSLPKELLELIALCLMTDVTDYVRFGVVCKLWWSVFVAIKPPRKLPPQIPWLLI----N 878
W+ LP EL+E+I+ + T +DY+ F VC W S K P LPPQ+PWLL+ +
Sbjct: 5 WTQLPPELIEIISKKI-TIYSDYLHFQAVCHAWKSSIP--KTPNHLPPQLPWLLLPQSQS 61
Query: 877 DENLGTCFFSPSLNRRIWLKTPNP-HTHDCIGSNIGWLIMIGKNSPSMFLLNPLTEAKIF 701
+++ FF+ S + L P H GS+ GWLI++ +SPS+ ++NPLT KI
Sbjct: 62 NQSSYRAFFNLSTYKFHSLNLPEASHRKKHCGSSHGWLIILD-DSPSILVINPLTRRKIH 120
Query: 700 LPPATEISWMVDYQPSRIDTEYAVELFEYLGGVVHDYMFIPSRQVTRSLKLRAELSSHPT 521
LP + +V + + + EY L + RQ+ + +SS P
Sbjct: 121 LPAISSFPNVVSFDYANVGREY------LLVNPQGERNTASLRQMRDGFIKKVVMSSSP- 173
Query: 520 LFSMEGDRCVVLLLSGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQFY 341
+GD V + + A+C GD W IV+N + D+ Y +G FY
Sbjct: 174 -LEKKGDFFVAMAILCSTGDLAYCKNGDECW-NIVENSR-------SFSEDVIYFNGLFY 224
Query: 340 VADRSSRVVVCDVGPPYPGTKQFATMNSYHQLYTEYARLVELSGELLFIIPRLRP----- 176
+++ ++VVCDV P + + + + Q+ + LV SG+ L ++ R
Sbjct: 225 AVNKAGQIVVCDVNGNSP---KVSFIETPRQIGGDMQYLVS-SGDGLLLVTRYLDLDVEF 280
Query: 175 --FKYTNSEYPMGFRIFKLCQDSKEWVEVKNIGGATLFV 65
F Y + F +FKL + W V ++G LF+
Sbjct: 281 DIFIYKTAR----FEVFKLDLNGPRWERVTSLGDMMLFI 315