BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014783
         (841 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513521.1| transcription initiation factor iib, putativ...   366   4e-99
ref|XP_002277679.1| PREDICTED: transcription initiation factor I...   365   7e-99
ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   365   9e-99
emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]   365   9e-99
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   363   2e-98

>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
           gi|223547429|gb|EEF48924.1| transcription initiation
           factor iib, putative [Ricinus communis]
          Length = 312

 Score =  366 bits (939), Expect = 4e-99
 Identities = 182/220 (82%), Positives = 196/220 (89%)
 Frame = +2

Query: 41  RWQNRGSNPDRTLIMAFKSIAVMSDRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILA 220
           RWQNRGSNPDR+LI AFK+IA MSDRL LVATIKDRANEIYKKVEDQK +RGRNQDA+LA
Sbjct: 93  RWQNRGSNPDRSLIQAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKPLRGRNQDAVLA 152

Query: 221 ACLYIACRQEDKPRTVKEICSVANGATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDF 400
           ACLYIACRQEDKPRTVKEICSVANGATKKE+GRAKEYIVKQLEVE+GQS+EMG IHAGDF
Sbjct: 153 ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEVELGQSMEMGTIHAGDF 212

Query: 401 LRRFCSHLGMANQSVKAAQEAVQKSEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISL 580
           LRRFCSHLGM NQ+VKAAQEAV+KSEELDIRR              QLS+E+KLLKDIS 
Sbjct: 213 LRRFCSHLGMNNQAVKAAQEAVKKSEELDIRRSPISIAAAIIYMITQLSEEKKLLKDIST 272

Query: 581 ATGVAEGTIRNSYKDLYPYVSRLIPSWYAKEEDLKNLSSP 700
           +TGVAEGTIRNSYKDLYPY SR++PSWYAKEEDL NL SP
Sbjct: 273 STGVAEGTIRNSYKDLYPYASRIVPSWYAKEEDLINLCSP 312


>ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
           gi|297734946|emb|CBI17180.3| unnamed protein product
           [Vitis vinifera]
          Length = 314

 Score =  365 bits (937), Expect = 7e-99
 Identities = 186/233 (79%), Positives = 197/233 (84%)
 Frame = +2

Query: 2   GGXXXXXXXXXXXRWQNRGSNPDRTLIMAFKSIAVMSDRLNLVATIKDRANEIYKKVEDQ 181
           GG           RWQNRGSNPDR+LI AFK+IA M DRL LVATIKD ANEIYKKVEDQ
Sbjct: 82  GGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDRLGLVATIKDLANEIYKKVEDQ 141

Query: 182 KSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKKEVGRAKEYIVKQLEVEMG 361
           K +RGRNQDAILAAC+YIACRQEDKPRTVKEICSVANGATKKE+GRAKEYIVKQLEVEMG
Sbjct: 142 KPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEVEMG 201

Query: 362 QSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQKSEELDIRRXXXXXXXXXXXXXXQ 541
           QS+EMG IHAGDFLRRFCSHLGM NQ+VKAAQEAVQKSEELDIRR              Q
Sbjct: 202 QSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSEELDIRRSPISVAAAVIYMITQ 261

Query: 542 LSDERKLLKDISLATGVAEGTIRNSYKDLYPYVSRLIPSWYAKEEDLKNLSSP 700
           LSD++KLLKDISLATGVAEGTIRNSYKDLYPY SR+IPS YAKEEDL+NL SP
Sbjct: 262 LSDDKKLLKDISLATGVAEGTIRNSYKDLYPYASRIIPSSYAKEEDLRNLCSP 314


>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|296088031|emb|CBI35314.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  365 bits (936), Expect = 9e-99
 Identities = 182/220 (82%), Positives = 195/220 (88%)
 Frame = +2

Query: 41  RWQNRGSNPDRTLIMAFKSIAVMSDRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILA 220
           RWQNRGSNPDR LI+AFK+IA MSDRL LVATIKDRANEIYKKVEDQKS RGRNQDA+LA
Sbjct: 93  RWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLA 152

Query: 221 ACLYIACRQEDKPRTVKEICSVANGATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDF 400
           ACLYIACRQEDKPRTVKEICSVANGATKKE+GRAKEYIVKQLE E GQSVEMG IHAGDF
Sbjct: 153 ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDF 212

Query: 401 LRRFCSHLGMANQSVKAAQEAVQKSEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISL 580
           +RRFCS+LGM NQ VKAAQEAVQKSEE DIRR              QLSDE+KLL+DIS+
Sbjct: 213 MRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISI 272

Query: 581 ATGVAEGTIRNSYKDLYPYVSRLIPSWYAKEEDLKNLSSP 700
           ATGVAEGTIRNSYKDLYP++SR+IPSWYAKEEDL+NL SP
Sbjct: 273 ATGVAEGTIRNSYKDLYPHISRIIPSWYAKEEDLRNLCSP 312


>emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
          Length = 312

 Score =  365 bits (936), Expect = 9e-99
 Identities = 182/220 (82%), Positives = 195/220 (88%)
 Frame = +2

Query: 41  RWQNRGSNPDRTLIMAFKSIAVMSDRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILA 220
           RWQNRGSNPDR LI+AFK+IA MSDRL LVATIKDRANEIYKKVEDQKS RGRNQDA+LA
Sbjct: 93  RWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLA 152

Query: 221 ACLYIACRQEDKPRTVKEICSVANGATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDF 400
           ACLYIACRQEDKPRTVKEICSVANGATKKE+GRAKEYIVKQLE E GQSVEMG IHAGDF
Sbjct: 153 ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDF 212

Query: 401 LRRFCSHLGMANQSVKAAQEAVQKSEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISL 580
           +RRFCS+LGM NQ VKAAQEAVQKSEE DIRR              QLSDE+KLL+DIS+
Sbjct: 213 MRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISI 272

Query: 581 ATGVAEGTIRNSYKDLYPYVSRLIPSWYAKEEDLKNLSSP 700
           ATGVAEGTIRNSYKDLYP++SR+IPSWYAKEEDL+NL SP
Sbjct: 273 ATGVAEGTIRNSYKDLYPHISRIIPSWYAKEEDLRNLCSP 312


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|297739630|emb|CBI29812.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  363 bits (933), Expect = 2e-98
 Identities = 181/220 (82%), Positives = 195/220 (88%)
 Frame = +2

Query: 41  RWQNRGSNPDRTLIMAFKSIAVMSDRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILA 220
           RWQNRGSNPDR LI+AFK+IA MSDRL LVATIKDRANEIYKKVEDQKS RGRNQDA+LA
Sbjct: 93  RWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLA 152

Query: 221 ACLYIACRQEDKPRTVKEICSVANGATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDF 400
           ACLYIACRQEDKPRTVKEICSVANGATKKE+GRAKEYIVKQLE E GQSVEMG IHAGDF
Sbjct: 153 ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDF 212

Query: 401 LRRFCSHLGMANQSVKAAQEAVQKSEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISL 580
           +RRFCS+LGM NQ VKAAQEAVQKSEE DIRR              QLSDE+KLL+DIS+
Sbjct: 213 MRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISI 272

Query: 581 ATGVAEGTIRNSYKDLYPYVSRLIPSWYAKEEDLKNLSSP 700
           ATGVAEGTIRNSYKDLYP++S++IPSWYAKEEDL+NL SP
Sbjct: 273 ATGVAEGTIRNSYKDLYPHISKIIPSWYAKEEDLRNLCSP 312