BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014778
         (362 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003573633.1| PREDICTED: DNA-directed RNA polymerase III s...    98   6e-19
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-18
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...    94   1e-17
emb|CBI17549.3| unnamed protein product [Vitis vinifera]               94   1e-17
emb|CAN60111.1| hypothetical protein VITISV_023619 [Vitis vinifera]    94   1e-17

>ref|XP_003573633.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Brachypodium distachyon]
          Length = 663

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 137 YFTPSPLDNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVDNNS-NYXX 313
           YFTP P D++T LY+MQYPLRP WRPYELNE C++VRVKP   KVEV+L +D +S NY  
Sbjct: 112 YFTPKPFDDDTMLYIMQYPLRPCWRPYELNEICKEVRVKPRCSKVEVDLDIDTDSGNYDS 171

Query: 314 XXXXVPMITKQTLSS 358
                  +TKQTLSS
Sbjct: 172 DVSSSSKLTKQTLSS 186


>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
           predicted protein [Populus trichocarpa]
          Length = 667

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/74 (63%), Positives = 58/74 (78%)
 Frame = +2

Query: 137 YFTPSPLDNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVDNNSNYXXX 316
           Y+TPS +D NTQLYVMQYPLRP WRPYEL+E+C++VRVKPES +VEV+LS+D+  NY   
Sbjct: 118 YYTPS-VDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSIDDTKNYDPD 176

Query: 317 XXXVPMITKQTLSS 358
                 + KQTLSS
Sbjct: 177 IASRLNMKKQTLSS 190


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
           vinifera]
          Length = 672

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
 Frame = +2

Query: 137 YFTPSPLDNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYXX 313
           +FTP P D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NY  
Sbjct: 109 FFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDP 168

Query: 314 XXXXVPMITKQTLS-SW 361
                  + KQTLS SW
Sbjct: 169 DAPNAQRMKKQTLSTSW 185


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
 Frame = +2

Query: 137 YFTPSPLDNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYXX 313
           +FTP P D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NY  
Sbjct: 109 FFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDP 168

Query: 314 XXXXVPMITKQTLS-SW 361
                  + KQTLS SW
Sbjct: 169 DAPNAQRMKKQTLSTSW 185


>emb|CAN60111.1| hypothetical protein VITISV_023619 [Vitis vinifera]
          Length = 282

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
 Frame = +2

Query: 137 YFTPSPLDNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYXX 313
           +FTP P D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NY  
Sbjct: 109 FFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDP 168

Query: 314 XXXXVPMITKQTLS-SW 361
                  + KQTLS SW
Sbjct: 169 DVPNAQRMKKQTLSTSW 185