BLASTX nr result

ID: Coptis23_contig00014765 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014765
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519376.1| conserved hypothetical protein [Ricinus comm...    82   8e-14
ref|XP_002269195.1| PREDICTED: uncharacterized protein LOC100265...    82   8e-14
gb|ABK96167.1| unknown [Populus trichocarpa]                           81   1e-13
ref|XP_002303229.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11
ref|XP_003529690.1| PREDICTED: uncharacterized protein LOC100804...    72   8e-11

>ref|XP_002519376.1| conserved hypothetical protein [Ricinus communis]
           gi|223541443|gb|EEF42993.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 81.6 bits (200), Expect = 8e-14
 Identities = 46/88 (52%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = -1

Query: 406 RSCYCAFPKFMARRKKSCTPS-KDSDLGARRITSNVKQNLQFLKLWREFHXXXXXXXXXX 230
           R+ Y      M + KK  +PS KD +    RITSN+KQNLQFLKLW+EF           
Sbjct: 27  RNTYYKIVIVMGKNKKPRSPSPKDPEPAPPRITSNLKQNLQFLKLWKEFQKRKSSTPKPA 86

Query: 229 XSYRKKKGQKEEQLEDTELYLDPTVTLY 146
            SYRKKK QKE+  EDTELY DPT++LY
Sbjct: 87  TSYRKKKVQKEDLPEDTELYRDPTLSLY 114


>ref|XP_002269195.1| PREDICTED: uncharacterized protein LOC100265963 [Vitis vinifera]
           gi|297739435|emb|CBI29617.3| unnamed protein product
           [Vitis vinifera]
          Length = 282

 Score = 81.6 bits (200), Expect = 8e-14
 Identities = 46/82 (56%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
 Frame = -1

Query: 382 KFMARRKKSC---TPSKDSDLGARRITSNVKQNLQFLKLWREFHXXXXXXXXXXXSYRKK 212
           K +AR KKS    +P K S+    RIT+NVKQNLQFLKLW+EF            SYR+K
Sbjct: 14  KIVARSKKSSQQPSPYKGSESTPPRITTNVKQNLQFLKLWKEFQKRKSSTPKPATSYRRK 73

Query: 211 KGQKEEQLEDTELYLDPTVTLY 146
           K QK++  EDTELY DPTVTLY
Sbjct: 74  KVQKDDLPEDTELYHDPTVTLY 95


>gb|ABK96167.1| unknown [Populus trichocarpa]
          Length = 297

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
 Frame = -1

Query: 376 MARRKKS---CTPSKDSDLGARRITSNVKQNLQFLKLWREFHXXXXXXXXXXXSYRKKKG 206
           MA+ KKS    +P+K S+    RITSNVKQNLQFLKLW+EF            SYR+KK 
Sbjct: 29  MAKSKKSQPASSPNKGSESAPPRITSNVKQNLQFLKLWKEFQKRKSSTPKPSTSYRRKKV 88

Query: 205 QKEEQLEDTELYLDPTVTLY 146
           +KE+  EDTELY DPT++LY
Sbjct: 89  EKEDLPEDTELYRDPTLSLY 108


>ref|XP_002303229.1| predicted protein [Populus trichocarpa] gi|222840661|gb|EEE78208.1|
           predicted protein [Populus trichocarpa]
          Length = 253

 Score = 72.4 bits (176), Expect = 5e-11
 Identities = 37/64 (57%), Positives = 44/64 (68%)
 Frame = -1

Query: 337 SDLGARRITSNVKQNLQFLKLWREFHXXXXXXXXXXXSYRKKKGQKEEQLEDTELYLDPT 158
           S+    RITSNVKQNLQFLKLW+EF            SYR+KK +KE+  EDTELY DPT
Sbjct: 1   SESAPPRITSNVKQNLQFLKLWKEFQKRKSSTPKPSTSYRRKKVEKEDLPEDTELYRDPT 60

Query: 157 VTLY 146
           ++LY
Sbjct: 61  LSLY 64


>ref|XP_003529690.1| PREDICTED: uncharacterized protein LOC100804585 [Glycine max]
          Length = 286

 Score = 71.6 bits (174), Expect = 8e-11
 Identities = 38/77 (49%), Positives = 50/77 (64%)
 Frame = -1

Query: 376 MARRKKSCTPSKDSDLGARRITSNVKQNLQFLKLWREFHXXXXXXXXXXXSYRKKKGQKE 197
           M R+K++    +DS+    RITSNVKQNL+FLKLW+ F            SYRKKK +KE
Sbjct: 25  MVRKKQT----QDSESTPPRITSNVKQNLRFLKLWKSFQNRNSSTPRPSTSYRKKKVEKE 80

Query: 196 EQLEDTELYLDPTVTLY 146
           + + DT+LY DPT +LY
Sbjct: 81  DDVVDTDLYRDPTTSLY 97


Top