BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014749
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004133873.1| PREDICTED: cleavage and polyadenylation spec...   214   4e-54
gb|ABK21275.1| unknown [Picea sitchensis]                             214   8e-54
ref|XP_002269748.1| PREDICTED: cleavage and polyadenylation spec...   214   8e-54
gb|AFK44906.1| unknown [Medicago truncatula]                          213   1e-53
ref|XP_002510802.1| pre-mRNA cleavage factor im, 25kD subunit, p...   213   1e-53

>ref|XP_004133873.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5-like [Cucumis sativus]
           gi|449480168|ref|XP_004155818.1| PREDICTED: cleavage and
           polyadenylation specificity factor subunit 5-like
           [Cucumis sativus]
          Length = 200

 Score =  214 bits (546), Expect = 4e-54
 Identities = 101/118 (85%), Positives = 103/118 (87%)
 Frame = -2

Query: 403 LKPGENEIEGXXXXXXXXXXXXXXXLQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 224
           LKPGENEIEG               LQPDWQIGECVAIWWRPNFET+MYPYCPPHITKPK
Sbjct: 81  LKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPK 140

Query: 223 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI 50
           ECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI
Sbjct: 141 ECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI 198


>gb|ABK21275.1| unknown [Picea sitchensis]
          Length = 177

 Score =  214 bits (544), Expect = 8e-54
 Identities = 99/119 (83%), Positives = 103/119 (86%)
 Frame = -2

Query: 403 LKPGENEIEGXXXXXXXXXXXXXXXLQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 224
           LKPGENE+EG               LQPDWQIGECVA+WWRPNFET+MYPYCPPHITKPK
Sbjct: 58  LKPGENEVEGLKRKLSSKLAANSTTLQPDWQIGECVAVWWRPNFETLMYPYCPPHITKPK 117

Query: 223 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIN 47
           ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRF FNM+N
Sbjct: 118 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFTFNMVN 176


>ref|XP_002269748.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5 isoform 1 [Vitis vinifera]
           gi|297745235|emb|CBI40315.3| unnamed protein product
           [Vitis vinifera]
          Length = 200

 Score =  214 bits (544), Expect = 8e-54
 Identities = 101/118 (85%), Positives = 103/118 (87%)
 Frame = -2

Query: 403 LKPGENEIEGXXXXXXXXXXXXXXXLQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 224
           LKPGENEIEG               LQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK
Sbjct: 81  LKPGENEIEGLKRKLSSKLAANSLALQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 140

Query: 223 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI 50
           ECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNM+
Sbjct: 141 ECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMM 198


>gb|AFK44906.1| unknown [Medicago truncatula]
          Length = 200

 Score =  213 bits (542), Expect = 1e-53
 Identities = 102/120 (85%), Positives = 102/120 (85%)
 Frame = -2

Query: 403 LKPGENEIEGXXXXXXXXXXXXXXXLQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 224
           LKPGENEIEG               L PDWQIGECVAIWWRPNFETIMYPYCPPHITKPK
Sbjct: 81  LKPGENEIEGLKRKLTSKLGANSPGLVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 140

Query: 223 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMINN 44
           ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF MI N
Sbjct: 141 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFKMITN 200


>ref|XP_002510802.1| pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus
           communis] gi|223549917|gb|EEF51404.1| pre-mRNA cleavage
           factor im, 25kD subunit, putative [Ricinus communis]
          Length = 200

 Score =  213 bits (542), Expect = 1e-53
 Identities = 102/118 (86%), Positives = 102/118 (86%)
 Frame = -2

Query: 403 LKPGENEIEGXXXXXXXXXXXXXXXLQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 224
           LKPGENEIEG               L PDWQIGECVAIWWRPNFETIMYPYCPPHITKPK
Sbjct: 81  LKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK 140

Query: 223 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI 50
           ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI
Sbjct: 141 ECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI 198