BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014738
         (645 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305847.1| predicted protein [Populus trichocarpa] gi|2...    78   1e-12
ref|NP_564675.1| polyubiquitin 12 [Arabidopsis thaliana] gi|1222...    77   2e-12
ref|XP_003567643.1| PREDICTED: ubiquitin-60S ribosomal protein L...    77   3e-12
gb|EIW62510.1| ubiquitin 10.1 [Trametes versicolor FP-101664 SS1]      77   4e-12
ref|XP_003608276.1| Ubiquitin [Medicago truncatula] gi|355509331...    76   6e-12

>ref|XP_002305847.1| predicted protein [Populus trichocarpa] gi|222848811|gb|EEE86358.1|
           predicted protein [Populus trichocarpa]
          Length = 369

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 40/112 (35%), Positives = 68/112 (60%)
 Frame = -3

Query: 340 MKINMRVMKTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGI 161
           M I ++VMKT  ++V  SDTI  +K+ F E EG+   + ++LFF  + L  D ++VDYGI
Sbjct: 1   MTIYLKVMKTSTMKVQRSDTIGTIKSAFCEKEGIPK-SFQELFFNGDRLKDDQRVVDYGI 59

Query: 160 KEGSTLNLFLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            + +TL++ L S   +++ V +    K++ ++  T D ++ +KA IL  E I
Sbjct: 60  PKDATLHMILQSSVGVKLLVVIPSRQKSVVVEARTYDTVQKIKAVILEKEQI 111


>ref|NP_564675.1| polyubiquitin 12 [Arabidopsis thaliana]
           gi|122213849|sp|Q3E7K8.1|UBQ12_ARATH RecName:
           Full=Polyubiquitin 12; Contains: RecName:
           Full=Ubiquitin-related 1; Contains: RecName:
           Full=Ubiquitin-related 2; Contains: RecName:
           Full=Ubiquitin-related 3; Flags: Precursor
           gi|332195060|gb|AEE33181.1| polyubiquitin 12
           [Arabidopsis thaliana]
          Length = 230

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
 Frame = -3

Query: 535 ITAKTRVAMKLFNDHVDKKKRLVERFE----EGHVFEYSVDEEKYGMELVNNRVDXXXXX 368
           +T KT+V     +D +D  K  ++  E    + H   ++  + + G  L +  V      
Sbjct: 8   LTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYNVQEDSTL 67

Query: 367 XXXXXENKIMKINMRVM--KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSL 194
                    M+I ++ +  KTI LEV  SDTI  +KAK  + EG+   + ++L F    L
Sbjct: 68  HLLLRFRGGMQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIP-PDQQRLIFAGKQL 126

Query: 193 DSDNKLVDYGIKEGSTLNLFLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSM 14
           +    L DY I++ STL+L L     +QI VK +   KTITL+V++ D I +VKA I   
Sbjct: 127 EDGRTLADYNIQKESTLHLVLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDK 185

Query: 13  EGIT 2
           EGI+
Sbjct: 186 EGIS 189


>ref|XP_003567643.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Brachypodium
           distachyon]
          Length = 218

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 49/104 (47%), Positives = 63/104 (60%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV   DTI  VKAK  + EG+   + ++L F    LD    L DY I++ STL+L
Sbjct: 11  KTITLEVESRDTIDSVKAKIQDKEGIPP-DQQRLIFAGKQLDDGRTLADYNIQKESTLHL 69

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L   AK+QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 70  VLRLRAKMQIFVK-TLTGKTITLEVESSDTIDNVKAKIHDKEGI 112


>gb|EIW62510.1| ubiquitin 10.1 [Trametes versicolor FP-101664 SS1]
          Length = 463

 Score = 76.6 bits (187), Expect = 4e-12
 Identities = 49/104 (47%), Positives = 64/104 (61%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           +TI LEV  SDTI  VKAK  E EG+S  + ++L F +  LD    L DY I++ STL+L
Sbjct: 321 RTITLEVRSSDTIDDVKAKIQEIEGIS-PDRQRLIFASKQLDDGRTLSDYNIQKESTLHL 379

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 380 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 422



 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 11  KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 70  VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 112



 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 87  KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 145

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 146 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 188



 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 163 KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 222 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 264



 Score = 68.9 bits (167), Expect = 8e-10
 Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 239 KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 297

Query: 136 FLH-SGA-----KIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGIT 2
            L   GA      +QI VK  H  +TITL+V + D I  VKA I  +EGI+
Sbjct: 298 VLRLRGAFRVLDSMQIFVKWLH-GRTITLEVRSSDTIDDVKAKIQEIEGIS 347


>ref|XP_003608276.1| Ubiquitin [Medicago truncatula] gi|355509331|gb|AES90473.1|
           Ubiquitin [Medicago truncatula]
          Length = 533

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 48/104 (46%), Positives = 63/104 (60%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 239 KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA IL  EGI
Sbjct: 298 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKILDKEGI 340



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 11  KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 70  VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 112



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 87  KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 146 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 188



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 163 KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 222 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 264



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 391 KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 450 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 492



 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 47/104 (45%), Positives = 62/104 (59%)
 Frame = -3

Query: 316 KTIPLEVMESDTIRKVKAKFSETEGVSMMNLKKLFFGANSLDSDNKLVDYGIKEGSTLNL 137
           KTI LEV  SDTI  VKAK  + EG+   + ++L F    L+    L DY I++ STL+L
Sbjct: 315 KTITLEVESSDTIDNVKAKILDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 373

Query: 136 FLHSGAKIQIEVKLSHYSKTITLDVDTMDPIRSVKANILSMEGI 5
            L     +QI VK +   KTITL+V++ D I +VKA I   EGI
Sbjct: 374 VLRLRGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 416