BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014627
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   126   2e-27
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   118   6e-25
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   114   1e-23
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   114   1e-23
emb|CAA73803.1| reverse transcriptase [Allium cepa]                   113   1e-23

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  126 bits (317), Expect = 2e-27
 Identities = 58/110 (52%), Positives = 80/110 (72%)
 Frame = +2

Query: 8   VSKVLTNRIQLIISELVSLNQSAFIPGRTIQDNLLLAHELIRGYARSHGPKHCSIKIDIK 187
           +SK+LTNR++ II E+V+  QS FIPGR I DN+LLA ELIRGY R H    C +K+DI+
Sbjct: 527 ISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIR 586

Query: 188 KAYDSISWATIERVLHRLRFPEKFIGWIKMCYTSPTYSILVNGSPQGYFE 337
           KAYDS+ W+ +E +L+   FP +F+GWI  C ++ +YS+LVNG P   F+
Sbjct: 587 KAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQ 636


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  118 bits (295), Expect = 6e-25
 Identities = 57/110 (51%), Positives = 74/110 (67%)
 Frame = +2

Query: 8   VSKVLTNRIQLIISELVSLNQSAFIPGRTIQDNLLLAHELIRGYARSHGPKHCSIKIDIK 187
           +SK+LT R+Q +I+E+V   Q+ FIP R I DN+LLA ELIRGY R H    C IK+DI+
Sbjct: 530 ISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIR 589

Query: 188 KAYDSISWATIERVLHRLRFPEKFIGWIKMCYTSPTYSILVNGSPQGYFE 337
           KAYDS+ W  +E +L  L FP  FI WI  C  + +YSIL+NG P   F+
Sbjct: 590 KAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFD 639


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  114 bits (284), Expect = 1e-23
 Identities = 52/109 (47%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
 Frame = +2

Query: 8   VSKVLTNRIQLIISELVSLNQSAFIPGRTIQDNLLLAHELIRGYARSHGPKHCS--IKID 181
           V+K++T R+QLI+ +L+S NQSAF+PGR I DN+L+ HE++     S   KHCS  +K D
Sbjct: 412 VAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTD 471

Query: 182 IKKAYDSISWATIERVLHRLRFPEKFIGWIKMCYTSPTYSILVNGSPQG 328
           + KAYD + W  +++VL R  F   +I W+  C TS +YS L+NG+PQG
Sbjct: 472 MSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQG 520


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  114 bits (284), Expect = 1e-23
 Identities = 55/109 (50%), Positives = 76/109 (69%), Gaps = 2/109 (1%)
 Frame = +2

Query: 8   VSKVLTNRIQLIISELVSLNQSAFIPGRTIQDNLLLAHELIRGYARSHGPKHCS--IKID 181
           V+K+LT R+Q  +SEL+SL+QSAF+PGR I DN+L+ HE++     S   K+CS  IK D
Sbjct: 458 VAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTD 517

Query: 182 IKKAYDSISWATIERVLHRLRFPEKFIGWIKMCYTSPTYSILVNGSPQG 328
           + KAYD I W  ++ VL RL F +K+I W+  C  + +YS L+NGSPQG
Sbjct: 518 MSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQG 566


>emb|CAA73803.1| reverse transcriptase [Allium cepa]
          Length = 137

 Score =  113 bits (283), Expect = 1e-23
 Identities = 50/110 (45%), Positives = 76/110 (69%)
 Frame = +2

Query: 5   CVSKVLTNRIQLIISELVSLNQSAFIPGRTIQDNLLLAHELIRGYARSHGPKHCSIKIDI 184
           C+SKVL +R++ ++  LVS NQ+A++ GR I D++LL+HELI+GY R        +K+DI
Sbjct: 15  CISKVLASRLKHVLPTLVSPNQAAYLSGRNILDHVLLSHELIKGYKRKSATPRAMLKLDI 74

Query: 185 KKAYDSISWATIERVLHRLRFPEKFIGWIKMCYTSPTYSILVNGSPQGYF 334
            KA+D++ W +I R+L  + FP   I WI  C +SPT+SI +NG  +G+F
Sbjct: 75  MKAFDTLQWNSIVRILGYMNFPPHIIAWIYECISSPTFSININGKNEGFF 124