BLASTX nr result
ID: Coptis23_contig00014595
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00014595
(526 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi... 219 3e-55
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera] 219 3e-55
ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containi... 123 2e-26
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi... 115 4e-24
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi... 115 4e-24
>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 219 bits (557), Expect = 3e-55
Identities = 111/164 (67%), Positives = 130/164 (79%), Gaps = 4/164 (2%)
Frame = -1
Query: 484 RRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQN 305
RRKF IKQ L+SWN+MLAGYA +G EE EL + MK G+EPD+ITWNGL+TG+TQ
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQY 477
Query: 304 GDGIMALEFFYRM----CETNTITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVG 137
GDG ALEFF RM + NT T+SGALAAC V++LKLGKEIHG+V+R IELSTGVG
Sbjct: 478 GDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVG 537
Query: 136 SALITTMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQ 5
SALI +MYSGCD +E ACSVF+ LS +DVVVWNSIISACAQ G+
Sbjct: 538 SALI-SMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580
Score = 91.3 bits (225), Expect = 8e-17
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 41/200 (20%)
Frame = -1
Query: 484 RRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQN 305
RR F I+ K + WN M++GY KG ++ + + MK GV+PD +TWN +I+GY Q+
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQS 304
Query: 304 GDGIMALEFFYRM----------------------------------------CETNTIT 245
G A ++F M + N+IT
Sbjct: 305 GQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSIT 364
Query: 244 LSGALAACSLVKDLKLGKEIHGFVIR-KQIELSTGVGSALITTMYSGCDHMEWACSVFNV 68
++ A++AC+ + L+ G+EIHG+ I+ ++++ VG++L+ Y+ C +E A F +
Sbjct: 365 IASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV-DYYAKCRSVEVARRKFGM 423
Query: 67 LSDKDVVVWNSIISACAQHG 8
+ D+V WN++++ A G
Sbjct: 424 IKQTDLVSWNAMLAGYALRG 443
Score = 82.0 bits (201), Expect = 5e-14
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Frame = -1
Query: 349 DVITWNGLITGYTQNGDGIMALEFFYRM----CETNTITLSGALAACSLVKDLKLGKEIH 182
DV+ WN +I+ Q+G + AL+ M E NT+T+ AL ACS + L+ GKEIH
Sbjct: 564 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH 623
Query: 181 GFVIRKQIELSTGVGSALITTMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQG 2
F+IR ++ + ++LI MY C ++ + +F+++ +D+V WN +IS HG G
Sbjct: 624 QFIIRCGLDTCNFILNSLI-DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFG 682
Score = 59.7 bits (143), Expect = 3e-07
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Frame = -1
Query: 433 MLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCETN 254
+L Y Q GC E+ +F+ M E +V +W ++ Y GD ++ FY M
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMS----ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185
Query: 253 T----ITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGCDHMEWA 86
ACS +K+ ++GK+++ +++ E ++ V +++ M+ C M+ A
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILD-MFIKCGRMDIA 244
Query: 85 CSVFNVLSDKDVVVWNSIISACAQHGQ 5
F + KDV +WN ++S G+
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGE 271
>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 219 bits (557), Expect = 3e-55
Identities = 111/164 (67%), Positives = 130/164 (79%), Gaps = 4/164 (2%)
Frame = -1
Query: 484 RRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQN 305
RRKF IKQ L+SWN+MLAGYA +G EE EL + MK G+EPD+ITWNGL+TG+TQ
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQY 477
Query: 304 GDGIMALEFFYRM----CETNTITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVG 137
GDG ALEFF RM + NT T+SGALAAC V++LKLGKEIHG+V+R IELSTGVG
Sbjct: 478 GDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVG 537
Query: 136 SALITTMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQ 5
SALI +MYSGCD +E ACSVF+ LS +DVVVWNSIISACAQ G+
Sbjct: 538 SALI-SMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580
Score = 91.3 bits (225), Expect = 8e-17
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 41/200 (20%)
Frame = -1
Query: 484 RRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQN 305
RR F I+ K + WN M++GY KG ++ + + MK GV+PD +TWN +I+GY Q+
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQS 304
Query: 304 GDGIMALEFFYRM----------------------------------------CETNTIT 245
G A ++F M + N+IT
Sbjct: 305 GQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSIT 364
Query: 244 LSGALAACSLVKDLKLGKEIHGFVIR-KQIELSTGVGSALITTMYSGCDHMEWACSVFNV 68
++ A++AC+ + L+ G+EIHG+ I+ ++++ VG++L+ Y+ C +E A F +
Sbjct: 365 IASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV-DYYAKCRSVEVARRKFGM 423
Query: 67 LSDKDVVVWNSIISACAQHG 8
+ D+V WN++++ A G
Sbjct: 424 IKQTDLVSWNAMLAGYALRG 443
Score = 82.0 bits (201), Expect = 5e-14
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Frame = -1
Query: 349 DVITWNGLITGYTQNGDGIMALEFFYRM----CETNTITLSGALAACSLVKDLKLGKEIH 182
DV+ WN +I+ Q+G + AL+ M E NT+T+ AL ACS + L+ GKEIH
Sbjct: 564 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH 623
Query: 181 GFVIRKQIELSTGVGSALITTMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQG 2
F+IR ++ + ++LI MY C ++ + +F+++ +D+V WN +IS HG G
Sbjct: 624 QFIIRCGLDTCNFILNSLI-DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFG 682
Score = 59.7 bits (143), Expect = 3e-07
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Frame = -1
Query: 433 MLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCETN 254
+L Y Q GC E+ +F+ M E +V +W ++ Y GD ++ FY M
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMS----ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185
Query: 253 T----ITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGCDHMEWA 86
ACS +K+ ++GK+++ +++ E ++ V +++ M+ C M+ A
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILD-MFIKCGRMDIA 244
Query: 85 CSVFNVLSDKDVVVWNSIISACAQHGQ 5
F + KDV +WN ++S G+
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGE 271
>ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 123 bits (308), Expect = 2e-26
Identities = 60/161 (37%), Positives = 106/161 (65%), Gaps = 4/161 (2%)
Frame = -1
Query: 472 NSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGI 293
N + K+ +S N++++ +++ G E+ +++FN M S P++I+WN +I+G+ NG +
Sbjct: 411 NGLNSKIEVS-NALVSAFSKHGQIEQAYQVFNNMSS----PNLISWNTIISGFLFNGFTL 465
Query: 292 MALEFFYRMC----ETNTITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALI 125
LE FY + + N TLS L+ C+ + L+ GK+IHG+++R + T +G+ALI
Sbjct: 466 QGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALI 525
Query: 124 TTMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQG 2
T MY+ C ++W+ +FNV++ +D+V WN++ISA AQHG+G
Sbjct: 526 T-MYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKG 565
Score = 58.5 bits (140), Expect = 6e-07
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Frame = -1
Query: 439 NSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCE 260
N++L Y G + +E+F +S D IT+N +I G G AL F M E
Sbjct: 223 NALLTMYFNSGKVADAYEVFEEAES--TVHDDITFNVMIGGLASVGRDEEALIMFKEMQE 280
Query: 259 T----NTITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGCDHME 92
+T +++CS ++ ++H I+ E T V +A +T MYS C ++
Sbjct: 281 ACLRPTELTFVSVMSSCS---SARVSHQVHAQAIKMGFEACTPVSNAAMT-MYSSCGNLH 336
Query: 91 WACSVFNVLSDKDVVVWNSIISACAQ 14
VF+ L +KD++ WN II AQ
Sbjct: 337 AVHMVFDRLEEKDLISWNIIIMNYAQ 362
>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 115 bits (288), Expect = 4e-24
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Frame = -1
Query: 451 LISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFY 272
L+++N M+A Y+Q G + +L M+S+G+ PDV TW +I+G++Q+ AL+FF
Sbjct: 281 LVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFK 340
Query: 271 RM----CETNTITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGC 104
+M E NTIT++ A +AC+ +K L+ G EIH F I+ I T VG++LI MYS C
Sbjct: 341 KMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLI-DMYSKC 399
Query: 103 DHMEWACSVFNVLSDKDVVVWNSIISACAQHGQG 2
+E A VF+ + +KDV WNS+I Q G G
Sbjct: 400 GKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYG 433
Score = 105 bits (263), Expect = 3e-21
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 40/199 (20%)
Frame = -1
Query: 484 RRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQN 305
R F++I +K + +WNSM+ GY Q G + +ELF ++ V P+V+TWN +I+G QN
Sbjct: 406 RHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQN 465
Query: 304 GDGIMALEFF-----------------------------------YRMCET-----NTIT 245
GD A++ F +R ++ N++T
Sbjct: 466 GDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVT 525
Query: 244 LSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGCDHMEWACSVFNVL 65
+ L AC+ V K KEIHG V+R+ +E V ++L+ T Y+ +++++ +VFN +
Sbjct: 526 ILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDT-YAKSGNIKYSRTVFNGM 584
Query: 64 SDKDVVVWNSIISACAQHG 8
S KD++ WNSII+ HG
Sbjct: 585 SSKDIITWNSIIAGYILHG 603
Score = 58.9 bits (141), Expect = 4e-07
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Frame = -1
Query: 433 MLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCETN 254
+++ YA+ GC ++ ++F+GM+ E ++ TW+ +I Y++ +E F+ M
Sbjct: 120 LVSMYAKCGCLKDARKVFDGMQ----ERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDG 175
Query: 253 TIT----LSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGCDHMEWA 86
+ L AC +DL+ K IH VIR + + ++++T C + A
Sbjct: 176 VLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVK-CGKLSLA 234
Query: 85 CSVFNVLSDKDVVVWNSIISACAQHGQG 2
F + ++D V WN +I+ Q G G
Sbjct: 235 RKFFGNMDERDGVSWNVMIAGYCQKGNG 262
Score = 57.4 bits (137), Expect = 1e-06
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Frame = -1
Query: 487 TRRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQ 308
+R FN + K +I+WNS++AGY GC + F+LF+ M++LG+ P+ T +I Y
Sbjct: 577 SRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGI 636
Query: 307 NGDGIMALEFFYRMCETNTI--TLSGALAACSLV-KDLKLGKEIHGFVIRKQIELSTGVG 137
G F + E + I TL LA L + +L I F+ IE +
Sbjct: 637 AGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIE-FIEDMPIEPDVSIW 695
Query: 136 SALITT--MYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQ 5
++L+T + + A + L + V++ ++ A A +G+
Sbjct: 696 TSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGK 741
>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 1463
Score = 115 bits (288), Expect = 4e-24
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Frame = -1
Query: 451 LISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFY 272
L+++N M+A Y+Q G + +L M+S+G+ PDV TW +I+G++Q+ AL+FF
Sbjct: 281 LVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFK 340
Query: 271 RM----CETNTITLSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGC 104
+M E NTIT++ A +AC+ +K L+ G EIH F I+ I T VG++LI MYS C
Sbjct: 341 KMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLI-DMYSKC 399
Query: 103 DHMEWACSVFNVLSDKDVVVWNSIISACAQHGQG 2
+E A VF+ + +KDV WNS+I Q G G
Sbjct: 400 GKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYG 433
Score = 105 bits (263), Expect = 3e-21
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 40/199 (20%)
Frame = -1
Query: 484 RRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQN 305
R F++I +K + +WNSM+ GY Q G + +ELF ++ V P+V+TWN +I+G QN
Sbjct: 406 RHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQN 465
Query: 304 GDGIMALEFF-----------------------------------YRMCET-----NTIT 245
GD A++ F +R ++ N++T
Sbjct: 466 GDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVT 525
Query: 244 LSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGCDHMEWACSVFNVL 65
+ L AC+ V K KEIHG V+R+ +E V ++L+ T Y+ +++++ +VFN +
Sbjct: 526 ILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDT-YAKSGNIKYSRTVFNGM 584
Query: 64 SDKDVVVWNSIISACAQHG 8
S KD++ WNSII+ HG
Sbjct: 585 SSKDIITWNSIIAGYILHG 603
Score = 58.9 bits (141), Expect = 4e-07
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Frame = -1
Query: 433 MLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCETN 254
+++ YA+ GC ++ ++F+GM+ E ++ TW+ +I Y++ +E F+ M
Sbjct: 120 LVSMYAKCGCLKDARKVFDGMQ----ERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDG 175
Query: 253 TIT----LSGALAACSLVKDLKLGKEIHGFVIRKQIELSTGVGSALITTMYSGCDHMEWA 86
+ L AC +DL+ K IH VIR + + ++++T C + A
Sbjct: 176 VLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVK-CGKLSLA 234
Query: 85 CSVFNVLSDKDVVVWNSIISACAQHGQG 2
F + ++D V WN +I+ Q G G
Sbjct: 235 RKFFGNMDERDGVSWNVMIAGYCQKGNG 262
Score = 57.4 bits (137), Expect = 1e-06
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Frame = -1
Query: 487 TRRKFNSIKQKVLISWNSMLAGYAQKGCREETFELFNGMKSLGVEPDVITWNGLITGYTQ 308
+R FN + K +I+WNS++AGY GC + F+LF+ M++LG+ P+ T +I Y
Sbjct: 577 SRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGI 636
Query: 307 NGDGIMALEFFYRMCETNTI--TLSGALAACSLV-KDLKLGKEIHGFVIRKQIELSTGVG 137
G F + E + I TL LA L + +L I F+ IE +
Sbjct: 637 AGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIE-FIEDMPIEPDVSIW 695
Query: 136 SALITT--MYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQ 5
++L+T + + A + L + V++ ++ A A +G+
Sbjct: 696 TSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGK 741