BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00014545
         (817 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ...   134   3e-29
ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar...   131   2e-28
emb|CAA06829.1| DYW7 protein [Arabidopsis thaliana]                   131   2e-28
ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group] g...   127   2e-27
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi...   127   4e-27

>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355517031|gb|AES98654.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  134 bits (336), Expect = 3e-29
 Identities = 64/130 (49%), Positives = 83/130 (63%)
 Frame = -2

Query: 816  WIEMKNTVHTIGTGERSMTNSERIYSQLARIAEEIKIVLPYPHDTQLCIDDEEREEKCGF 637
            WIE  N VHT   G++S    ++++S L R+A  +K    +  D +L I++EE+E     
Sbjct: 761  WIERNNVVHTFVVGDQSNPYLDKLHSWLKRVAVNVKT---HVSDNELYIEEEEKENTSSV 817

Query: 636  HSEKLALSFALISTPYSSQSIRIIKNCRMCGDCHRTVKFISLRYGRDIYLYDSKRLHHFK 457
            HSEKLA +FALI      Q +RI+K  RMC DCH T K+IS+ YG +IYL DS  LHHFK
Sbjct: 818  HSEKLAFAFALIDPHNKPQILRIVKKLRMCRDCHDTAKYISMAYGCEIYLSDSNCLHHFK 877

Query: 456  NGQCSCRDYW 427
             G CSCRDYW
Sbjct: 878  GGHCSCRDYW 887


>ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g19720; AltName: Full=Protein DYW7
            gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
            [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 894

 Score =  131 bits (329), Expect = 2e-28
 Identities = 63/131 (48%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
 Frame = -2

Query: 816  WIEMKNTVHTIGTGERSMTNSERIYSQLARIAEEIKIVLPYPHDTQLCIDDEEREEKCGF 637
            WIE++N +HT  TG++S   ++ +Y  + +++        Y  + +L I++E REE CG 
Sbjct: 766  WIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQY--NGELWIEEEGREETCGI 823

Query: 636  HSEKLALSFALISTPYSSQS-IRIIKNCRMCGDCHRTVKFISLRYGRDIYLYDSKRLHHF 460
            HSEK A++F LIS+  +S++ IRI+KN RMC DCH T K++S RYG DI L D++ LHHF
Sbjct: 824  HSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHF 883

Query: 459  KNGQCSCRDYW 427
            KNG CSC+DYW
Sbjct: 884  KNGDCSCKDYW 894


>emb|CAA06829.1| DYW7 protein [Arabidopsis thaliana]
          Length = 406

 Score =  131 bits (329), Expect = 2e-28
 Identities = 63/131 (48%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
 Frame = -2

Query: 816 WIEMKNTVHTIGTGERSMTNSERIYSQLARIAEEIKIVLPYPHDTQLCIDDEEREEKCGF 637
           WIE++N +HT  TG++S   ++ +Y  + +++        Y  + +L I++E REE CG 
Sbjct: 278 WIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQY--NGELWIEEEGREETCGI 335

Query: 636 HSEKLALSFALISTPYSSQS-IRIIKNCRMCGDCHRTVKFISLRYGRDIYLYDSKRLHHF 460
           HSEK A++F LIS+  +S++ IRI+KN RMC DCH T K++S RYG DI L D++ LHHF
Sbjct: 336 HSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHF 395

Query: 459 KNGQCSCRDYW 427
           KNG CSC+DYW
Sbjct: 396 KNGDCSCKDYW 406


>ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
           gi|33146689|dbj|BAC80084.1| putative pentatricopeptide
           (PPR) repeat-containing protein [Oryza sativa Japonica
           Group] gi|50510012|dbj|BAD30625.1| putative
           pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group] gi|113610797|dbj|BAF21175.1|
           Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  127 bits (320), Expect = 2e-27
 Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
 Frame = -2

Query: 816 WIEMKNTVHTIGTGERSMTNSERIYSQLARIAEEIKIVLPYPHDTQLCI---DDEEREEK 646
           WI +KNTVHT   G+ S   S  IY+ L ++ E +K +  Y   T L +   +DE+RE  
Sbjct: 590 WIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEI-GYTSRTDLVVHDVEDEQRETA 648

Query: 645 CGFHSEKLALSFALISTPYSSQSIRIIKNCRMCGDCHRTVKFISLRYGRDIYLYDSKRLH 466
             FHSEKLA++F +ISTP S   +RI KN R+C DCH  +K+ISL  GR+I + D  R H
Sbjct: 649 LKFHSEKLAIAFGIISTP-SGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFH 707

Query: 465 HFKNGQCSCRDYW 427
           HFK+  CSC D+W
Sbjct: 708 HFKDASCSCEDFW 720


>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
            chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  127 bits (318), Expect = 4e-27
 Identities = 65/133 (48%), Positives = 86/133 (64%), Gaps = 3/133 (2%)
 Frame = -2

Query: 816  WIEMKNTVHTIGTGERSMTNSERIYSQLARIAEEIKIVLPYPHDTQLCIDDEEREEKCGF 637
            WIE++N VH    GE S   + +IY +L ++A +IK  + Y  DT   + D E E+K  F
Sbjct: 679  WIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK-EMGYIPDTDFVLHDIEEEQKEQF 737

Query: 636  ---HSEKLALSFALISTPYSSQSIRIIKNCRMCGDCHRTVKFISLRYGRDIYLYDSKRLH 466
               HSEK+A++F LIST   S+ IRI KN R+CGDCH  +K+IS+  GR+I + DS R H
Sbjct: 738  LFQHSEKIAVAFGLISTS-QSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFH 796

Query: 465  HFKNGQCSCRDYW 427
            H KNG CSC DYW
Sbjct: 797  HIKNGVCSCNDYW 809