BLASTX nr result
ID: Coptis23_contig00014505
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00014505
(1177 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi... 487 e-135
ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containi... 439 e-121
ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group] g... 431 e-118
gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japo... 431 e-118
gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays] 428 e-117
>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Vitis vinifera]
Length = 1058
Score = 487 bits (1253), Expect = e-135
Identities = 219/313 (69%), Positives = 275/313 (87%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 EMYEFDIVTWNAILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGILCACSHAGLVNE 181
EM E D++TWNA+L+GCAQNG GKEA+ IFE+M+ +G+LP+Q+SFLG+LCACSHAGLV+E
Sbjct: 746 EMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDE 805
Query: 182 GCSYFNSM-KDYRVVPLEGHYACMVDLLGRAGHLHEAEELIENMPIEPDSVVWAALLGGC 358
G ++FNSM + Y ++PL HY CMVDLLGRAG+L EAE LIENMP++PDSV+W ALLG C
Sbjct: 806 GWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGAC 865
Query: 359 RIHQNVELGRKVAERLFQLEPQKTGNYVLLSNIYASLGMWEEVEEVRKLMRDRGVAKEPG 538
RIH+NVELG++VAERLFQ+ K+ YVLLSN++AS GMW++V E+RKLM+D+G+ KEPG
Sbjct: 866 RIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPG 925
Query: 539 ISWIQIKNKLLSFVNGDKSQDRIEEVYATLKEFYGRLREVGYVPDTNFVLHDVEEEQKEN 718
ISWIQ+KNKL FV GD++ D+IEE+Y+ LKE+YG R GY+PDTNFVLHDVEEEQK+N
Sbjct: 926 ISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQN 985
Query: 719 ALLYHSEKLAIGYGLLNTPHGTSIQIMKNLRICGDCHSFTKFLSKVTQREIVIRDGNRFH 898
LLYHSEKLA+ +G+L+TP+G+ IQI+KNLRICGDCH+F KF+SKVT R+I+IRDGNRFH
Sbjct: 986 ELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFH 1045
Query: 899 HFQDGSCSCGDYW 937
HF+DGSCSCGDYW
Sbjct: 1046 HFRDGSCSCGDYW 1058
>ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Brachypodium distachyon]
Length = 921
Score = 439 bits (1129), Expect = e-121
Identities = 201/312 (64%), Positives = 255/312 (81%), Gaps = 1/312 (0%)
Frame = +2
Query: 5 MYEFDIVTWNAILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGILCACSHAGLVNEG 184
M E DI TWN + GCAQ+G G+EA+ ++E M++ GVLPN+++F+G+L ACSHAGLV+EG
Sbjct: 610 MEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEG 669
Query: 185 CSYFNSM-KDYRVVPLEGHYACMVDLLGRAGHLHEAEELIENMPIEPDSVVWAALLGGCR 361
+F SM +DY + PL HYACMVDLLGR G + AE+ I +MPIEPD+V+W+ALLG C+
Sbjct: 670 WQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACK 729
Query: 362 IHQNVELGRKVAERLFQLEPQKTGNYVLLSNIYASLGMWEEVEEVRKLMRDRGVAKEPGI 541
IH+N E+GR+ AE+LF EP GNYV+LSNIY+SLGMW EV E+RK+M+ RGV+KEPG
Sbjct: 730 IHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGC 789
Query: 542 SWIQIKNKLLSFVNGDKSQDRIEEVYATLKEFYGRLREVGYVPDTNFVLHDVEEEQKENA 721
SW+QI+NK+ SFV GDK ++IEE+ TL++ Y LR GYVPDT FVLHD++EEQKE++
Sbjct: 790 SWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESS 849
Query: 722 LLYHSEKLAIGYGLLNTPHGTSIQIMKNLRICGDCHSFTKFLSKVTQREIVIRDGNRFHH 901
LLYHSEKLA+ YGLL TP G IQIMKNLRICGDCH+F KF+S VT+R+I IRDGNRFHH
Sbjct: 850 LLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHH 909
Query: 902 FQDGSCSCGDYW 937
F++GSCSCGD+W
Sbjct: 910 FRNGSCSCGDFW 921
>ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa Japonica
Group] gi|218190072|gb|EEC72499.1| hypothetical protein
OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa
Japonica Group]
Length = 922
Score = 431 bits (1107), Expect = e-118
Identities = 197/312 (63%), Positives = 254/312 (81%), Gaps = 1/312 (0%)
Frame = +2
Query: 5 MYEFDIVTWNAILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGILCACSHAGLVNEG 184
M E DI TWN I+ G AQ+G G+EA+ +++ M++ GVLPN+++F+G+L ACSHAGLV+EG
Sbjct: 611 MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG 670
Query: 185 CSYFNSM-KDYRVVPLEGHYACMVDLLGRAGHLHEAEELIENMPIEPDSVVWAALLGGCR 361
+F SM +DY + PL HYACMVDLLGR G + AE+ I +MPIEPD+V+W+ALLG C+
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACK 730
Query: 362 IHQNVELGRKVAERLFQLEPQKTGNYVLLSNIYASLGMWEEVEEVRKLMRDRGVAKEPGI 541
IH+N E+G++ AE+LF++EP GNYV+LSNIY+SLGMW EV EVRK+M+ +GV KEPG
Sbjct: 731 IHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGC 790
Query: 542 SWIQIKNKLLSFVNGDKSQDRIEEVYATLKEFYGRLREVGYVPDTNFVLHDVEEEQKENA 721
SW QIK+K+ SFV GDK ++IEE+ ATL+E Y L+ GYVPDT FVLHD++EEQKE++
Sbjct: 791 SWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESS 850
Query: 722 LLYHSEKLAIGYGLLNTPHGTSIQIMKNLRICGDCHSFTKFLSKVTQREIVIRDGNRFHH 901
LLYHSEKLA+ Y LL TP G IQI+KNLRICGDCH+F KF+S VT+R+I IRDGNRFHH
Sbjct: 851 LLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHH 910
Query: 902 FQDGSCSCGDYW 937
F++GSCSC D+W
Sbjct: 911 FRNGSCSCEDFW 922
>gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 431 bits (1107), Expect = e-118
Identities = 197/312 (63%), Positives = 254/312 (81%), Gaps = 1/312 (0%)
Frame = +2
Query: 5 MYEFDIVTWNAILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGILCACSHAGLVNEG 184
M E DI TWN I+ G AQ+G G+EA+ +++ M++ GVLPN+++F+G+L ACSHAGLV+EG
Sbjct: 611 MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG 670
Query: 185 CSYFNSM-KDYRVVPLEGHYACMVDLLGRAGHLHEAEELIENMPIEPDSVVWAALLGGCR 361
+F SM +DY + PL HYACMVDLLGR G + AE+ I +MPIEPD+V+W+ALLG C+
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACK 730
Query: 362 IHQNVELGRKVAERLFQLEPQKTGNYVLLSNIYASLGMWEEVEEVRKLMRDRGVAKEPGI 541
IH+N E+G++ AE+LF++EP GNYV+LSNIY+SLGMW EV EVRK+M+ +GV KEPG
Sbjct: 731 IHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGC 790
Query: 542 SWIQIKNKLLSFVNGDKSQDRIEEVYATLKEFYGRLREVGYVPDTNFVLHDVEEEQKENA 721
SW QIK+K+ SFV GDK ++IEE+ ATL+E Y L+ GYVPDT FVLHD++EEQKE++
Sbjct: 791 SWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESS 850
Query: 722 LLYHSEKLAIGYGLLNTPHGTSIQIMKNLRICGDCHSFTKFLSKVTQREIVIRDGNRFHH 901
LLYHSEKLA+ Y LL TP G IQI+KNLRICGDCH+F KF+S VT+R+I IRDGNRFHH
Sbjct: 851 LLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHH 910
Query: 902 FQDGSCSCGDYW 937
F++GSCSC D+W
Sbjct: 911 FRNGSCSCEDFW 922
>gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 428 bits (1100), Expect = e-117
Identities = 198/308 (64%), Positives = 252/308 (81%), Gaps = 1/308 (0%)
Frame = +2
Query: 5 MYEFDIVTWNAILIGCAQNGFGKEAVDIFEKMKADGVLPNQISFLGILCACSHAGLVNEG 184
M E DI TWN I+ G AQ+G G+EA+ +++ M + GVLPN+++F+G+L ACSH+GLV+EG
Sbjct: 610 MEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEG 669
Query: 185 CSYFNSMK-DYRVVPLEGHYACMVDLLGRAGHLHEAEELIENMPIEPDSVVWAALLGGCR 361
+F SM DY + PL HYACMVDLLGRAG + AE I +MPIEPDSV+W+ALLG C+
Sbjct: 670 HQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACK 729
Query: 362 IHQNVELGRKVAERLFQLEPQKTGNYVLLSNIYASLGMWEEVEEVRKLMRDRGVAKEPGI 541
IH+NVE+GR+ AE+LF +EP GNYV+LSNIY+S GMW+EV +VRKLM++RGV K+PG
Sbjct: 730 IHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGC 789
Query: 542 SWIQIKNKLLSFVNGDKSQDRIEEVYATLKEFYGRLREVGYVPDTNFVLHDVEEEQKENA 721
SW+QIKNK+ SFV GD+ ++I+ +YATL E Y L+ GYVPDT+FVLHD++EEQKE++
Sbjct: 790 SWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESS 849
Query: 722 LLYHSEKLAIGYGLLNTPHGTSIQIMKNLRICGDCHSFTKFLSKVTQREIVIRDGNRFHH 901
LLYHSEKLA+ YGLL TP G IQIMKNLRICGDCH+F KF+S VT+REI +RDGNRFHH
Sbjct: 850 LLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHH 909
Query: 902 FQDGSCSC 925
F++GSCSC
Sbjct: 910 FRNGSCSC 917