BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013977
         (917 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              320   3e-85
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   297   2e-78
emb|CBI26210.3| unnamed protein product [Vitis vinifera]              273   5e-71
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2...   241   2e-61
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...   239   5e-61

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  320 bits (820), Expect = 3e-85
 Identities = 173/304 (56%), Positives = 222/304 (73%), Gaps = 4/304 (1%)
 Frame = +2

Query: 5   GIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIRYTELSSQQVKNCLLVLIQHNCVH 184
           G++LAV+LIS+HFG+LV KVC+CLLRKGTLTL   IR+TEL  QQVK+C+LVLIQHNCV 
Sbjct: 6   GVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQHNCVQ 65

Query: 185 AFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQGLLQHG 364
           AF    + G  G  P+  TQY A+F NI+HRMRF KFLAIVSEELDKECEE+ +GLLQHG
Sbjct: 66  AFAIQQEVGF-GEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLLQHG 124

Query: 365 RLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERCYETIG-ISQADDKNSSTG 541
           RLT+EQI+ RA S ++EG   VQDA+R +F KLV AH+VERC  +   ++   ++ +   
Sbjct: 125 RLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPAR 184

Query: 542 KRGAKLAKFV-EIETAEQQAMSAGVPSD--RFLFVPNTGIDATSEANASGKSFDVTVGEK 712
           KRGAK AK V E +T EQ+A++A  P D  RF  + NTG D     N       VT GEK
Sbjct: 185 KRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPN-------VTAGEK 237

Query: 713 RKVEALEMDERKKAMLCEKEVLWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLNAMID 892
           RK +ALE+D+   A  CEK+VLWRANFE+FV  LR KAC+A V+++LDDGAA+ L+AM++
Sbjct: 238 RKQDALELDKETGAS-CEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 296

Query: 893 SIKT 904
           + ++
Sbjct: 297 ATRS 300


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
           vinifera]
          Length = 511

 Score =  297 bits (761), Expect = 2e-78
 Identities = 165/304 (54%), Positives = 213/304 (70%), Gaps = 4/304 (1%)
 Frame = +2

Query: 5   GIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIRYTELSSQQVKNCLLVLIQHNCVH 184
           G++LAV+LIS+HFG+LV KVC+CLLRKGTLTL   IR+TEL  QQVK+C+LVLIQHNCV 
Sbjct: 6   GVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQHNCVQ 65

Query: 185 AFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQGLLQHG 364
           AF    +       P+  TQY A+F NI+HRMRF KFLAIVSEELDKECEE+ +GLLQHG
Sbjct: 66  AFAIQQE------APRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLLQHG 119

Query: 365 RLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERCYETIG-ISQADDKNSSTG 541
           RLT+EQI+ RA  K N+    VQDA+R +F KLV AH+VERC  +   ++   ++ +   
Sbjct: 120 RLTLEQILDRA--KSNQREPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPAR 177

Query: 542 KRGAKLAKFV-EIETAEQQAMSAGVPSD--RFLFVPNTGIDATSEANASGKSFDVTVGEK 712
           KRGAK AK V E +T EQ+A++A  P D  RF  + NTG D     N             
Sbjct: 178 KRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPN------------- 224

Query: 713 RKVEALEMDERKKAMLCEKEVLWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLNAMID 892
           RK +ALE+D+   A  CEK+VLWRANFE+FV  LR KAC+A V+++LDDGAA+ L+AM++
Sbjct: 225 RKQDALELDKETGAS-CEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 283

Query: 893 SIKT 904
           + ++
Sbjct: 284 ATRS 287


>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  273 bits (697), Expect = 5e-71
 Identities = 153/304 (50%), Positives = 202/304 (66%), Gaps = 4/304 (1%)
 Frame = +2

Query: 5   GIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIRYTELSSQQVKNCLLVLIQHNCVH 184
           GIKLAV+LIST FGD   KVC+CLLRKGTL L + +R  +LS QQVK  L VLIQHNCV 
Sbjct: 6   GIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQHNCVQ 65

Query: 185 AFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQGLLQHG 364
           AF   ++ G  G  P   TQY  +F+NI+HRMRFPK LAIVS+ELDKECEELF+  L+HG
Sbjct: 66  AFAMEHEGGC-GEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAFLKHG 124

Query: 365 RLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERC-YETIGISQADDKNSSTG 541
            LT++QI+ R  S +NEG C VQDA+R +F KLVNAHYVERC      +   D++ +   
Sbjct: 125 WLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEKTPAR 184

Query: 542 KRGAKLAKFV-EIETAEQQAMSAGVPSDR--FLFVPNTGIDATSEANASGKSFDVTVGEK 712
           K  A  AK V E+E  EQ  ++   PS    F  + +T  D   +  + G    V +G+K
Sbjct: 185 KHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGD-KSIGNPPGVVIGKK 243

Query: 713 RKVEALEMDERKKAMLCEKEVLWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLNAMID 892
           RK +AL++D    A   EK+V WRAN+++ V HLR KAC+  VR++LD GAA+ L+AM++
Sbjct: 244 RKQDALKLDTESGA-ASEKDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAMLE 302

Query: 893 SIKT 904
           + ++
Sbjct: 303 ATQS 306


>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
           predicted protein [Populus trichocarpa]
          Length = 519

 Score =  241 bits (614), Expect = 2e-61
 Identities = 141/308 (45%), Positives = 196/308 (63%), Gaps = 8/308 (2%)
 Frame = +2

Query: 5   GIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIRYTELSSQQVKNCLLVLIQHNCVH 184
           GIK AV++I+ HFG LV KVC+CLL+KG L L+E +RYTELS   V+NCLLVLIQHNC+ 
Sbjct: 5   GIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQHNCLQ 64

Query: 185 AFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQGLLQHG 364
            F    ++G  G V K ++ Y  +F+N++HR+RF KF+AIVS+E DK C +L + LLQHG
Sbjct: 65  PFLL-EEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETLLQHG 123

Query: 365 RLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERC--YETIGISQADDKNSST 538
           RL+ EQI      + + GG    +A++    KLV A YVERC   E      ++++ +  
Sbjct: 124 RLSSEQIFDGFRDRSSSGG---MEALQENMHKLVMARYVERCPISEPFLALPSEEEAAPV 180

Query: 539 GKRGAKLAK-FVEIETAEQQAMSAGVPSD--RFLFV--PNTGIDATSEANASGKSFDVTV 703
            +RGAK AK F+E ET EQ+ + A VP +  RF F   P  G D     N S  +    +
Sbjct: 181 RRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSSN----I 236

Query: 704 GEKRKVEALEMDERKKAMLCEKEV-LWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLN 880
           G+KRK++ALE D      + +K+V LWR NFE+F+  LR K C+ TVR++LDD AA    
Sbjct: 237 GDKRKLDALESD--IDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAATVFT 294

Query: 881 AMIDSIKT 904
           AM+D+ ++
Sbjct: 295 AMLDASRS 302


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
           [Ricinus communis] gi|223549895|gb|EEF51382.1|
           DNA-directed RNA polymerase III 62 kDa polypeptide,
           putative [Ricinus communis]
          Length = 485

 Score =  239 bits (611), Expect = 5e-61
 Identities = 135/304 (44%), Positives = 192/304 (63%), Gaps = 3/304 (0%)
 Frame = +2

Query: 2   NGIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIRYTELSSQQVKNCLLVLIQHNCV 181
           +GIK A ++I+ HFG+LV KVC+CLLRKG LT+Q+ + +TEL+  QVKN LLVLIQHNCV
Sbjct: 6   HGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHNCV 65

Query: 182 HAFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQGLLQH 361
            A+       + G+  K TT Y A+F+NI+HR+RF KFLAI+S++  K C ++ +GLL+H
Sbjct: 66  QAY-------RSGDDLKLTTHYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLEH 118

Query: 362 GRLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERCYETIGI-SQADDKNSST 538
           GRLTV+QI+ RA S+ + G     D+++    KLVN  Y+E C  +  + +   ++    
Sbjct: 119 GRLTVKQIVDRANSRNSIG----LDSVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDRA 174

Query: 539 GKRGAKLAKFV-EIETAEQQAMSAGVPSDRFLFVPNTGIDATSEA-NASGKSFDVTVGEK 712
            KR AK AK V E ET EQ+ ++  VP D   F  +   +   +A N   KS D  VG+K
Sbjct: 175 KKRSAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKDDAENDQNKSSDKHVGDK 234

Query: 713 RKVEALEMDERKKAMLCEKEVLWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLNAMID 892
                         +  ++ VLWRANFE+F+  LR KAC+  VR +LDDGAA+ L+AM+D
Sbjct: 235 --------------VAEDQVVLWRANFEEFIRRLRHKACIENVRGRLDDGAAIVLSAMLD 280

Query: 893 SIKT 904
           + +T
Sbjct: 281 ASRT 284