BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013919
         (1230 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...   455   e-125
ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|2...   450   e-124
ref|XP_002515072.1| pentatricopeptide repeat-containing protein,...   439   e-121
ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containi...   430   e-118
ref|XP_003614316.1| Pentatricopeptide repeat-containing protein ...   418   e-114

>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like
            [Vitis vinifera]
          Length = 503

 Score =  455 bits (1170), Expect = e-125
 Identities = 218/376 (57%), Positives = 290/376 (77%), Gaps = 10/376 (2%)
 Frame = -2

Query: 1100 SPEEPLRLFNEATSRYPKYRHNDR----------HPCRLWSMKDLIHQMKRDSCQLRDSI 951
            +P   L++FNEA S++P YRHN               R+  M+++I QMK+DSC+ +DS+
Sbjct: 23   NPLTALKIFNEAKSKFPNYRHNGPVYATMINVLGSSGRIAEMREVIDQMKQDSCECKDSV 82

Query: 950  FVTAITTYAKFGLLDDAVSLFRNLPRFNCVNWTQSFNTLLQIMVRESHFQTAHELYMDNS 771
            F + + TYA+ G++D+AVSLF+ LP+FNCVNWT SFNTLL+I+V+ES  +TA  L++++S
Sbjct: 83   FSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNTLLRILVKESKLETACRLFLEHS 142

Query: 770  TGWEVKNQTRSINLFIEVLCRNNHSDLALDIFQEMNNMCCYPDRDTYKVLMRGLCQDKRL 591
             GWEVK++  S+NL ++ LC+ N SDLAL +FQEM   CC PD+++Y++LMRGLC+D RL
Sbjct: 143  CGWEVKSRIGSLNLLMDALCQINRSDLALHVFQEMRYQCCSPDKESYRILMRGLCEDGRL 202

Query: 590  NEATHVLYSMFWRISQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQR 411
            NEATH+LYSMFWRISQKG GEDI  YRTLL+ALCDNGH+EEA+++LGKVL+KGLK PK+ 
Sbjct: 203  NEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGHVEEALEILGKVLKKGLKAPKRC 262

Query: 410  LQGFTLTRFLEIENVEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEM 231
                 L+     E++E  KGLINEALI+G VPS+ SYSAMAIDLYS+ +I +AN+V DEM
Sbjct: 263  RGHLDLSYCCNGEDIERTKGLINEALIRGGVPSMASYSAMAIDLYSERKIGEANQVLDEM 322

Query: 230  RGRGFNPSVSMYEAKLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGK 51
            R RGF PS+S+YEAK+ ALCR G  + AV+VI EEM++D+CVPT   Y I++KGLC EGK
Sbjct: 323  RDRGFKPSLSIYEAKIAALCRCGGVEEAVKVIKEEMVEDSCVPTVRLYNIVLKGLCREGK 382

Query: 50   SIVGIRYLDKMAKQVG 3
            S   + YL+KMA+QVG
Sbjct: 383  SAFAVGYLEKMARQVG 398


>ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|222843166|gb|EEE80713.1|
            predicted protein [Populus trichocarpa]
          Length = 503

 Score =  450 bits (1157), Expect = e-124
 Identities = 212/376 (56%), Positives = 284/376 (75%), Gaps = 10/376 (2%)
 Frame = -2

Query: 1100 SPEEPLRLFNEATSRYPKYRHNDR----------HPCRLWSMKDLIHQMKRDSCQLRDSI 951
            +P   L++F +A  +YP Y HN            +  R+  MK++I QM+ DSC+ +DS+
Sbjct: 23   NPLTALQIFKDAKDKYPSYHHNGPVYATMISILGNSDRIAEMKEVIDQMRDDSCECKDSV 82

Query: 950  FVTAITTYAKFGLLDDAVSLFRNLPRFNCVNWTQSFNTLLQIMVRESHFQTAHELYMDNS 771
            FVTAI TYA  G + +AVSLF+N+P+FNCVNWT+SFNTLLQI+V+ES  +TAH  +++NS
Sbjct: 83   FVTAIKTYASAGQISEAVSLFKNIPKFNCVNWTESFNTLLQILVKESKLETAHRFFLENS 142

Query: 770  TGWEVKNQTRSINLFIEVLCRNNHSDLALDIFQEMNNMCCYPDRDTYKVLMRGLCQDKRL 591
             GWEVK++ R++NL ++VLC+ N SDLAL IFQEM+   CYP+RD+Y++LMRGLC+D RL
Sbjct: 143  CGWEVKSRIRALNLLLDVLCQRNRSDLALQIFQEMDYQGCYPNRDSYRILMRGLCEDGRL 202

Query: 590  NEATHVLYSMFWRISQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQR 411
            NEATH+LYSMFWRISQKGSGEDIVVYRTLL+ALCDNG +EEA+++LGK+LRKGLK PK+ 
Sbjct: 203  NEATHLLYSMFWRISQKGSGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLKAPKRY 262

Query: 410  LQGFTLTRFLEIENVEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEM 231
                 L++    E++E  K LINEALI+G VPSL SY+AMA+DLY +G+   A++V DE 
Sbjct: 263  RHRLDLSQCNNCEDIEATKLLINEALIRGGVPSLASYTAMAVDLYCEGKTGQADKVLDET 322

Query: 230  RGRGFNPSVSMYEAKLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGK 51
            + RG+ PS+  YEAK+ ALCR+GR+  A+ VI  EM++ N VP    Y +++KGLCD G 
Sbjct: 323  QERGYRPSLRTYEAKVTALCRQGRSGEAINVIEREMVERNSVPNVRLYNVLLKGLCDAGN 382

Query: 50   SIVGIRYLDKMAKQVG 3
            S + + YL +MAKQVG
Sbjct: 383  SAIAVSYLKRMAKQVG 398


>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  439 bits (1130), Expect = e-121
 Identities = 206/381 (54%), Positives = 282/381 (74%), Gaps = 10/381 (2%)
 Frame = -2

Query: 1115 VSDHPSPEEPLRLFNEATSRYPKYRHNDR----------HPCRLWSMKDLIHQMKRDSCQ 966
            + +  +P   LR+F EA  +YP YRHN               R+  MK+++ QM+ DSC+
Sbjct: 18   IRNQKNPLIALRIFKEAKDKYPNYRHNGPVYATMIGILGSSGRITEMKEVLDQMREDSCE 77

Query: 965  LRDSIFVTAITTYAKFGLLDDAVSLFRNLPRFNCVNWTQSFNTLLQIMVRESHFQTAHEL 786
             +DSIF  AI TYA+ GLL++A+SLF+N+P+FNCVNWT+SFNTLLQIMV+ES  + AH L
Sbjct: 78   CKDSIFANAIKTYARVGLLNEAISLFKNIPQFNCVNWTESFNTLLQIMVKESKLEAAHRL 137

Query: 785  YMDNSTGWEVKNQTRSINLFIEVLCRNNHSDLALDIFQEMNNMCCYPDRDTYKVLMRGLC 606
            ++++S GWEVK++ RS+NL ++VLC++N SD+AL +FQEMN   CYPDRD+Y+++M GLC
Sbjct: 138  FLESSYGWEVKSRVRSLNLLMDVLCQHNRSDVALQVFQEMNYQGCYPDRDSYRIVMMGLC 197

Query: 605  QDKRLNEATHVLYSMFWRISQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLK 426
            +D RLNEATH+LYSMFWRISQKGSGEDIV+YR  L+ALCD G +E+A+++LGK+LRKGLK
Sbjct: 198  KDGRLNEATHLLYSMFWRISQKGSGEDIVIYRIFLDALCDIGMVEQALEVLGKILRKGLK 257

Query: 425  TPKQRLQGFTLTRFLEIENVEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANR 246
             PK+      L+      N+E  K LINEALI+GA+PSL SY+AMA+D Y++G++  A++
Sbjct: 258  APKRCHPRLDLSNCNSDGNIETTKHLINEALIRGAIPSLSSYTAMAVDFYAEGKLSQADK 317

Query: 245  VFDEMRGRGFNPSVSMYEAKLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGL 66
            V DE + RGF PS+  YEAK+ ALC+EG+   A+ V+  EM++ NCVP    Y I++KGL
Sbjct: 318  VLDETQDRGFRPSLLTYEAKVAALCKEGKVHEAINVLEVEMVEGNCVPNVRLYNILLKGL 377

Query: 65   CDEGKSIVGIRYLDKMAKQVG 3
            CD   S   ++YL +MAKQ G
Sbjct: 378  CDARNSATAVKYLKRMAKQTG 398



 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 1/202 (0%)
 Frame = -2

Query: 647 PDRDTYKVLMRGLCQDKRLNEATHVLYSMFWRISQKGSGEDIVVYRTLLEALCDNGHLEE 468
           P   +Y  +      + +L++A  VL         +G    ++ Y   + ALC  G + E
Sbjct: 294 PSLSSYTAMAVDFYAEGKLSQADKVLDET----QDRGFRPSLLTYEAKVAALCKEGKVHE 349

Query: 467 AVQLLGKVLRKGLKTPKQRLQGFTLTRFLEIEN-VEGIKGLINEALIKGAVPSLVSYSAM 291
           A+ +L   + +G   P  RL    L    +  N    +K L   A   G V +  +Y  +
Sbjct: 350 AINVLEVEMVEGNCVPNVRLYNILLKGLCDARNSATAVKYLKRMAKQTGCVANKETYCIL 409

Query: 290 AIDLYSQGRIDDANRVFDEMRGRGFNPSVSMYEAKLEALCREGRADAAVQVIGEEMLDDN 111
              L   G   +A+R+ +EM  + + P V  +   +  LC  GR   A   + EEM+  +
Sbjct: 410 VHGLCQDGGFIEASRILEEMLIKSYWPPVDTFNMLIRGLCSIGRQYEATMWL-EEMISLD 468

Query: 110 CVPTATTYKIMVKGLCDEGKSI 45
             P  + +  +V  LC     I
Sbjct: 469 EAPELSVWNSLVTCLCSNTADI 490


>ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like
            [Glycine max]
          Length = 502

 Score =  430 bits (1106), Expect(2) = e-118
 Identities = 204/381 (53%), Positives = 286/381 (75%), Gaps = 10/381 (2%)
 Frame = -2

Query: 1115 VSDHPSPEEPLRLFNEATSRYPKYRHNDRHPC----------RLWSMKDLIHQMKRDSCQ 966
            +    +P + L +FNEA SRYP Y HN               RL  M+D+I QMK DSC+
Sbjct: 18   IKTQKNPLKALNIFNEAKSRYPNYYHNGPVYATMISILGTSGRLNEMRDVIEQMKEDSCE 77

Query: 965  LRDSIFVTAITTYAKFGLLDDAVSLFRNLPRFNCVNWTQSFNTLLQIMVRESHFQTAHEL 786
             +DS+FV+ I TYA  GL+D+A+SL++++PRFNCVNWT+SFNT+LQIMV+E+  + AH L
Sbjct: 78   CKDSVFVSVIKTYANAGLVDEAISLYKSIPRFNCVNWTESFNTMLQIMVKENRLEIAHRL 137

Query: 785  YMDNSTGWEVKNQTRSINLFIEVLCRNNHSDLALDIFQEMNNMCCYPDRDTYKVLMRGLC 606
            ++++S GWEV++  R++NL +  LC+ + SDLAL +FQEM+   CYP+RD+Y +LM+GLC
Sbjct: 138  FVESSCGWEVRSLVRALNLLMYALCQKSRSDLALQLFQEMDYQSCYPNRDSYAILMKGLC 197

Query: 605  QDKRLNEATHVLYSMFWRISQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLK 426
            QD+RL+EATH+LYSMFWRISQKG+GEDIVVYRTLL+ALCD G  EEA ++LGK+LRKGLK
Sbjct: 198  QDRRLHEATHLLYSMFWRISQKGNGEDIVVYRTLLDALCDAGKFEEAEEILGKILRKGLK 257

Query: 425  TPKQRLQGFTLTRFLEIENVEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANR 246
             PK+      L +  + +++E  K +I+EALIKG+VPSL SY+AMA+DLYS+G+ID+A++
Sbjct: 258  APKRCHSRLDLDQLSDGKDIESAKRMIHEALIKGSVPSLASYNAMAVDLYSEGKIDEADK 317

Query: 245  VFDEMRGRGFNPSVSMYEAKLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGL 66
            V  EM+ RGF P+ S++EAK+ ALC+  + D A++VI E+M+  NC+PTA  Y I++K L
Sbjct: 318  VIIEMQVRGFKPTHSIFEAKVAALCKVSKVDEAIKVIEEDMVKVNCLPTAKVYNILLKNL 377

Query: 65   CDEGKSIVGIRYLDKMAKQVG 3
            C+ G S   +  L+KM+ +VG
Sbjct: 378  CNVGNSTAILESLNKMSSKVG 398



 Score = 23.1 bits (48), Expect(2) = e-118
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 5/22 (22%)
 Frame = -3

Query: 1138 SMKWPKLV-----SQIIRVQKN 1088
            S++WP+++     SQII+ QKN
Sbjct: 2    SIRWPRVLTPTYLSQIIKTQKN 23


>ref|XP_003614316.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355515651|gb|AES97274.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 504

 Score =  418 bits (1075), Expect = e-114
 Identities = 200/375 (53%), Positives = 282/375 (75%), Gaps = 10/375 (2%)
 Frame = -2

Query: 1100 SPEEPLRLFNEATSRYPKYRHNDRHPC----------RLWSMKDLIHQMKRDSCQLRDSI 951
            +P + L +FNEA  +YPKY HN               RL  M DLI QMK DSC+ +DS+
Sbjct: 25   NPLKALEIFNEAKLKYPKYSHNGPVYATMINILGTSGRLKEMSDLIEQMKEDSCECKDSV 84

Query: 950  FVTAITTYAKFGLLDDAVSLFRNLPRFNCVNWTQSFNTLLQIMVRESHFQTAHELYMDNS 771
            FV+AI TYAK GL+D+A+SL++N+P+FNCVNWTQSFNTLL+IMV E+  + AH L++++S
Sbjct: 85   FVSAIKTYAKEGLVDEAISLYKNIPQFNCVNWTQSFNTLLEIMVNENKLEDAHSLFVESS 144

Query: 770  TGWEVKNQTRSINLFIEVLCRNNHSDLALDIFQEMNNMCCYPDRDTYKVLMRGLCQDKRL 591
             GWEVK++ +++NL +  LCR + SDLAL IFQEM+   CYP+R++Y ++M+GLCQDKRL
Sbjct: 145  CGWEVKSRVQALNLLMYALCRKSRSDLALQIFQEMDYQGCYPNRESYLIVMKGLCQDKRL 204

Query: 590  NEATHVLYSMFWRISQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQR 411
            +EATH+LYSMFWRIS KG+GEDIV+YRTLL+ALCDNG  +EAV++LGK+LRKGLK PK+ 
Sbjct: 205  HEATHLLYSMFWRISLKGNGEDIVIYRTLLDALCDNGKFDEAVEILGKILRKGLKAPKRC 264

Query: 410  LQGFTLTRFLEIENVEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEM 231
                 +++  + ++ E  K  I+EAL++G+VPS  SY++MA+DLY +G+ID+A++V  EM
Sbjct: 265  YNRLDISQCGDGKDAEVTKRWIHEALVRGSVPSTASYTSMAVDLYEEGKIDEADKVIIEM 324

Query: 230  RGRGFNPSVSMYEAKLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGK 51
            + R F P  S++EAK+ ALC+ G+ D A++VI E+M++ NC+P AT Y I++K L   G 
Sbjct: 325  KDRRFKPKHSIFEAKVAALCKVGKVDEAIKVIEEDMVEVNCLPNATVYTILLKNLGGVGN 384

Query: 50   SIVGIRYLDKMAKQV 6
            S   +  L+KM+K+V
Sbjct: 385  STSVLESLNKMSKKV 399