BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013879
         (1104 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319213.1| predicted protein [Populus trichocarpa] gi|2...   373   e-101
ref|XP_002523967.1| 50S ribosomal protein L3, putative [Ricinus ...   371   e-100
gb|AFK45366.1| unknown [Lotus japonicus]                              371   e-100
ref|XP_002271466.1| PREDICTED: 50S ribosomal protein L3-1, chlor...   370   e-100
ref|XP_003522341.1| PREDICTED: 50S ribosomal protein L3-1, chlor...   369   e-100

>ref|XP_002319213.1| predicted protein [Populus trichocarpa] gi|222857589|gb|EEE95136.1|
           predicted protein [Populus trichocarpa]
          Length = 222

 Score =  373 bits (958), Expect = e-101
 Identities = 183/221 (82%), Positives = 198/221 (89%)
 Frame = +1

Query: 286 SMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTEATDGYDSVQVGYRRV 465
           SMEAG+GVMGTKLGMMTYFE            FREGNIVTQIKT+ATDGYD+VQVGYRRV
Sbjct: 2   SMEAGVGVMGTKLGMMTYFEPNGKVVPVTVVGFREGNIVTQIKTDATDGYDAVQVGYRRV 61

Query: 466 RDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKDIFKEGDLVDVSGTTI 645
           RDKKLT PEMGHL K G IPMRHLQEFRL  ++GFE  Q+L+ +++FKEGDLVDVSGTTI
Sbjct: 62  RDKKLTKPEMGHLEKAGVIPMRHLQEFRLQGLDGFEIGQKLLFEELFKEGDLVDVSGTTI 121

Query: 646 GKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL 825
           GKGFQGGIKR NFKRGPMSHGSKSHRA+GSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL
Sbjct: 122 GKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL 181

Query: 826 RIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 948
           +IVKID DLR+VMI+GALPGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 182 KIVKIDNDLRVVMIKGALPGKPGNLLRIAPAKIVGKNIPKS 222


>ref|XP_002523967.1| 50S ribosomal protein L3, putative [Ricinus communis]
           gi|223536694|gb|EEF38335.1| 50S ribosomal protein L3,
           putative [Ricinus communis]
          Length = 285

 Score =  371 bits (953), Expect = e-100
 Identities = 184/238 (77%), Positives = 205/238 (86%), Gaps = 1/238 (0%)
 Frame = +1

Query: 238 SSCSNPMRARRM-VTHSSMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIK 414
           ++C+N  +   + +   SMEAGIGVMGTKLGMM+YFE            FREGNIVTQIK
Sbjct: 48  TTCTNGTKTSGLSIVAMSMEAGIGVMGTKLGMMSYFESDGTVVPVTVVGFREGNIVTQIK 107

Query: 415 TEATDGYDSVQVGYRRVRDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVV 594
           TEATDGYDSVQVGYRR+RD+KLT PE+GHL K G IPMRHLQEFRL +++GFE  Q+LV+
Sbjct: 108 TEATDGYDSVQVGYRRIRDRKLTKPELGHLEKAGVIPMRHLQEFRLQNIDGFEVGQKLVL 167

Query: 595 KDIFKEGDLVDVSGTTIGKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKG 774
           ++IFKEGDLVDVSG TIGKGFQGGIKR NFKRG M+HGSKSHRA+GSIGAGTTPGRVYKG
Sbjct: 168 EEIFKEGDLVDVSGITIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKG 227

Query: 775 KKMPGRMGGTKTKIRKLRIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 948
           KKMPGRMGGTKTKIRKL+IVKID DLR VMI+GALPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 228 KKMPGRMGGTKTKIRKLKIVKIDNDLRAVMIKGALPGKPGNLLRIAPAKIVGKNIPKN 285


>gb|AFK45366.1| unknown [Lotus japonicus]
          Length = 268

 Score =  371 bits (952), Expect = e-100
 Identities = 186/247 (75%), Positives = 205/247 (82%), Gaps = 7/247 (2%)
 Frame = +1

Query: 229 STSSSCSN-----PMRARR--MVTHSSMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFR 387
           ST   C N     P   +R   V   SMEAG+GVMGTKLGMM+YFE            F+
Sbjct: 22  STRMPCFNFRVSFPQSQKRGNRVVMMSMEAGVGVMGTKLGMMSYFEENGVVVPVTVVGFK 81

Query: 388 EGNIVTQIKTEATDGYDSVQVGYRRVRDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEG 567
           EGNIVTQ+KTEATDGYD+VQVGY+R+RD+KLT PE+GHL KVGAIPMRHLQEFRL S+EG
Sbjct: 82  EGNIVTQLKTEATDGYDAVQVGYQRIRDRKLTKPELGHLEKVGAIPMRHLQEFRLQSLEG 141

Query: 568 FEPNQRLVVKDIFKEGDLVDVSGTTIGKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAG 747
           F+ NQRLV  ++FKEGDLVDVSGTTIGKGFQGGIKRWNFKRGPMSHG KSHR +GSIGAG
Sbjct: 142 FDLNQRLVFDELFKEGDLVDVSGTTIGKGFQGGIKRWNFKRGPMSHGFKSHRQLGSIGAG 201

Query: 748 TTPGRVYKGKKMPGRMGGTKTKIRKLRIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIV 927
           TTPGRVY GKKMPGRMGGTK KIRKL+IVKID+DL +VMI+GALPGKPGNLLRI PAKIV
Sbjct: 202 TTPGRVYPGKKMPGRMGGTKRKIRKLKIVKIDKDLNVVMIKGALPGKPGNLLRITPAKIV 261

Query: 928 GKNIPKN 948
           GKNIPKN
Sbjct: 262 GKNIPKN 268


>ref|XP_002271466.1| PREDICTED: 50S ribosomal protein L3-1, chloroplastic-like [Vitis
           vinifera]
          Length = 281

 Score =  370 bits (950), Expect = e-100
 Identities = 179/225 (79%), Positives = 197/225 (87%)
 Frame = +1

Query: 274 VTHSSMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTEATDGYDSVQVG 453
           +   SMEAG+GVM TKLGMM+YFE            FREGNIVTQ+KTEATDGY +VQVG
Sbjct: 57  IIRMSMEAGVGVMATKLGMMSYFEPEGKVVPVTVVGFREGNIVTQVKTEATDGYSAVQVG 116

Query: 454 YRRVRDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKDIFKEGDLVDVS 633
           YRRVRD+KLT PEMGHL K G IPMRHLQEFRL SV+GFEPNQ+LV +++FKEGDLVDVS
Sbjct: 117 YRRVRDRKLTKPEMGHLEKAGTIPMRHLQEFRLVSVDGFEPNQKLVFEELFKEGDLVDVS 176

Query: 634 GTTIGKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKKMPGRMGGTKTK 813
           G TIGKGFQGGIKR NF+RGPM+HGSKSHRA+GSIGAGTTPG VYKGKKMPGRMGGTKTK
Sbjct: 177 GITIGKGFQGGIKRHNFRRGPMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTK 236

Query: 814 IRKLRIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 948
           IRKL+IVKID DLR+VMI+GA+PGKPGNLLRI PAKIVGKNIPKN
Sbjct: 237 IRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRITPAKIVGKNIPKN 281


>ref|XP_003522341.1| PREDICTED: 50S ribosomal protein L3-1, chloroplastic-like [Glycine
           max]
          Length = 263

 Score =  369 bits (948), Expect = e-100
 Identities = 181/221 (81%), Positives = 198/221 (89%)
 Frame = +1

Query: 286 SMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTEATDGYDSVQVGYRRV 465
           SMEAGIGVMGTKLGMM+YFE            F+EGNIVTQIKTEATDGYD+VQVGYRRV
Sbjct: 43  SMEAGIGVMGTKLGMMSYFESDGEVVPVTVVGFKEGNIVTQIKTEATDGYDAVQVGYRRV 102

Query: 466 RDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKDIFKEGDLVDVSGTTI 645
           RD+KLT PE+GHL KVGAIPMRHLQEFRL +++GF+ NQRLV  +IFKEGDLVDVSGTTI
Sbjct: 103 RDRKLTKPEIGHLQKVGAIPMRHLQEFRLQAIDGFDLNQRLVFDEIFKEGDLVDVSGTTI 162

Query: 646 GKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL 825
           GKGFQGGIKR NFKRGPM+HGSKSHR +GSIGAGTTPGRVYKGKKMPGRMGGTK KIRKL
Sbjct: 163 GKGFQGGIKRHNFKRGPMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKL 222

Query: 826 RIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 948
           +IVKID+DL +VMI+GA+PGKPGNLLRI PAKIVGKNIPKN
Sbjct: 223 KIVKIDKDLNVVMIKGAVPGKPGNLLRITPAKIVGKNIPKN 263