BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013875
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_197167.1| pentatricopeptide repeat-containing protein [Ar...    74   1e-11
ref|XP_002521681.1| pentatricopeptide repeat-containing protein,...    74   1e-11
ref|XP_002531100.1| pentatricopeptide repeat-containing protein,...    74   2e-11
gb|ABQ50548.1| hypothetical protein [Brassica rapa]                    73   3e-11
dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]         72   5e-11

>ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
           gi|10176973|dbj|BAB10191.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737318|dbj|BAF00605.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332004938|gb|AED92321.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/82 (42%), Positives = 52/82 (63%)
 Frame = +2

Query: 5   VQVFKEMQLKGFKPNTITYNTLIGGFCKSGEVLVAKEHLKDMIACGERPNQFTYSSLMHG 184
           +++F EM  +G   NT+TY  LI G+C++G++ VA+E  + M+ CG  PN  TY+ L+HG
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405

Query: 185 LFSNGCFADAMEFLYLMENNGM 250
           L  NG    A+  L  M+ NGM
Sbjct: 406 LCDNGKIEKALVILADMQKNGM 427



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/78 (41%), Positives = 47/78 (60%)
 Frame = +2

Query: 2   AVQVFKEMQLKGFKPNTITYNTLIGGFCKSGEVLVAKEHLKDMIACGERPNQFTYSSLMH 181
           A+ +F +M   G+KPN + YNT+I G CKS +V  A + L  M   G  P+  TY+SL+ 
Sbjct: 170 ALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS 229

Query: 182 GLFSNGCFADAMEFLYLM 235
           GL S+G ++DA   +  M
Sbjct: 230 GLCSSGRWSDATRMVSCM 247


>ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539072|gb|EEF40668.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 458

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 41/84 (48%), Positives = 55/84 (65%)
 Frame = +2

Query: 2   AVQVFKEMQLKGFKPNTITYNTLIGGFCKSGEVLVAKEHLKDMIACGERPNQFTYSSLMH 181
           A+QVFK+M+ +G +P+ ITYNTLI G  K G V  AK +LK M+  G  P+  TY+SLM+
Sbjct: 279 AIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMN 338

Query: 182 GLFSNGCFADAMEFLYLMENNGMK 253
           GL   G   DA+  L L+E+  MK
Sbjct: 339 GLCRKG---DALGALALLEDMEMK 359


>ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529296|gb|EEF31265.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 483

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 39/84 (46%), Positives = 54/84 (64%)
 Frame = +2

Query: 2   AVQVFKEMQLKGFKPNTITYNTLIGGFCKSGEVLVAKEHLKDMIACGERPNQFTYSSLMH 181
           A +VF EM  +  +P+ +TYN+LIG  C++GE+  AK   KDMI  G+RPN  TY+ LM 
Sbjct: 204 AGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKRPNAVTYALLME 263

Query: 182 GLFSNGCFADAMEFLYLMENNGMK 253
           GL S G + +A + L+ ME  G K
Sbjct: 264 GLCSMGEYKEAKKMLFDMEYRGCK 287


>gb|ABQ50548.1| hypothetical protein [Brassica rapa]
          Length = 229

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 33/78 (42%), Positives = 55/78 (70%)
 Frame = +2

Query: 5   VQVFKEMQLKGFKPNTITYNTLIGGFCKSGEVLVAKEHLKDMIACGERPNQFTYSSLMHG 184
           ++VF+E+ L+G   +T+TYNTL+ GFC++G++ VAKE  ++M++ G RP+  TY  L+ G
Sbjct: 66  MRVFREISLRGLVADTVTYNTLVQGFCEAGKLDVAKELFQEMVSQGARPDIVTYRILLDG 125

Query: 185 LFSNGCFADAMEFLYLME 238
           L  NG   +A++ L  M+
Sbjct: 126 LCDNGELQEALDILEKMQ 143


>dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/82 (42%), Positives = 53/82 (64%)
 Frame = +2

Query: 5   VQVFKEMQLKGFKPNTITYNTLIGGFCKSGEVLVAKEHLKDMIACGERPNQFTYSSLMHG 184
           +++F+E+  KG  PNTITYNTL+ GFC+SG++  AKE  ++M++ G  P+  TY  L+ G
Sbjct: 434 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 493

Query: 185 LFSNGCFADAMEFLYLMENNGM 250
           L  NG    A+E    M+ + M
Sbjct: 494 LCDNGELNKALEIFEKMQKSRM 515