BLASTX nr result

ID: Coptis23_contig00013841 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013841
         (839 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76530.1| hypothetical protein VITISV_012682 [Vitis vinifera]   315   8e-84
ref|XP_002285350.1| PREDICTED: peroxisomal membrane protein PMP2...   314   2e-83
ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP2...   311   2e-82
ref|XP_004167169.1| PREDICTED: LOW QUALITY PROTEIN: peroxisomal ...   308   1e-81
ref|NP_001237665.1| uncharacterized protein LOC100527292 [Glycin...   306   3e-81

>emb|CAN76530.1| hypothetical protein VITISV_012682 [Vitis vinifera]
          Length = 185

 Score =  315 bits (807), Expect = 8e-84
 Identities = 146/185 (78%), Positives = 165/185 (89%)
 Frame = +1

Query: 58  MSERMKGVLKSYLQQLQEHPLRTKAITAGVLAGFSDATAQKISGIKKIQLRRLLLVMVYG 237
           MS+ +K   ++YL QLQ HPLRTKAITAGVL G SD  AQKISGIK++QLRRL+L+M+YG
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 238 FAYGGPFGHFLHKVMDYIFKGKKDNTTIAKKVLLEQLTSSPWNNLVFMMYYGLVIEGRPW 417
           FAY GPFGHFLHK+MD IF+GKKDNTT+AKKV+LEQLTSSPWNN+ FMMYYGLV+EGR W
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRGW 120

Query: 418 SLVKTKVRKDYPLIQLTAWKFWPIVGWVNYQYMPLQLRVVFHSFVASCWGIFLNLKARTI 597
            LVK KVRKDYP +QLTAWKFWPIVGWVNYQYMPLQ RVVFHSFVASCW IFLNLKAR++
Sbjct: 121 GLVKNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLKARSV 180

Query: 598 AVKSA 612
           A+K A
Sbjct: 181 AIKKA 185


>ref|XP_002285350.1| PREDICTED: peroxisomal membrane protein PMP22 [Vitis vinifera]
           gi|296083689|emb|CBI23678.3| unnamed protein product
           [Vitis vinifera]
          Length = 185

 Score =  314 bits (804), Expect = 2e-83
 Identities = 145/185 (78%), Positives = 165/185 (89%)
 Frame = +1

Query: 58  MSERMKGVLKSYLQQLQEHPLRTKAITAGVLAGFSDATAQKISGIKKIQLRRLLLVMVYG 237
           MS+ +K   ++YL QLQ HPLRTKAITAGVL G SD  AQKISGIK++QLRRL+L+M+YG
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 238 FAYGGPFGHFLHKVMDYIFKGKKDNTTIAKKVLLEQLTSSPWNNLVFMMYYGLVIEGRPW 417
           FAY GPFGHFLHK+MD IF+GKKDNTT+AKKV+LEQLTSSPWNN+ FMMYYGLV+EGR W
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRGW 120

Query: 418 SLVKTKVRKDYPLIQLTAWKFWPIVGWVNYQYMPLQLRVVFHSFVASCWGIFLNLKARTI 597
            LV+ KVRKDYP +QLTAWKFWPIVGWVNYQYMPLQ RVVFHSFVASCW IFLNLKAR++
Sbjct: 121 GLVRNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLKARSV 180

Query: 598 AVKSA 612
           A+K A
Sbjct: 181 AIKKA 185


>ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis
           sativus]
          Length = 183

 Score =  311 bits (796), Expect = 2e-82
 Identities = 145/180 (80%), Positives = 162/180 (90%)
 Frame = +1

Query: 58  MSERMKGVLKSYLQQLQEHPLRTKAITAGVLAGFSDATAQKISGIKKIQLRRLLLVMVYG 237
           MS  +    + YL QLQ++PLRTKAITAGVLAG SD+ AQKISGIKK+Q RRLLL+M+YG
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 238 FAYGGPFGHFLHKVMDYIFKGKKDNTTIAKKVLLEQLTSSPWNNLVFMMYYGLVIEGRPW 417
           FAY GPFGHFLHK+MD IFKGKK NTT+AKKVLLEQ+TSSPWNNL FMMYYGLV+EGRPW
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLVVEGRPW 120

Query: 418 SLVKTKVRKDYPLIQLTAWKFWPIVGWVNYQYMPLQLRVVFHSFVASCWGIFLNLKARTI 597
           SLVK KVRKDYP IQLTAW+FWPIVGWVNYQYMP+Q RV+FHSFVASCWGIFLNLKAR++
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKARSV 180


>ref|XP_004167169.1| PREDICTED: LOW QUALITY PROTEIN: peroxisomal membrane protein
           PMP22-like [Cucumis sativus]
          Length = 183

 Score =  308 bits (789), Expect = 1e-81
 Identities = 143/180 (79%), Positives = 161/180 (89%)
 Frame = +1

Query: 58  MSERMKGVLKSYLQQLQEHPLRTKAITAGVLAGFSDATAQKISGIKKIQLRRLLLVMVYG 237
           MS  +    + YL QLQ++PLRTKAITAGVLAG SD+ AQKISGIKK+Q RRLLL+M+YG
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 238 FAYGGPFGHFLHKVMDYIFKGKKDNTTIAKKVLLEQLTSSPWNNLVFMMYYGLVIEGRPW 417
           FAY GPFGHFLHK+MD IFKGKK NTT+AKKVLLEQ+TSSPWN  +FMMYYGLV+EGRPW
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNXFIFMMYYGLVVEGRPW 120

Query: 418 SLVKTKVRKDYPLIQLTAWKFWPIVGWVNYQYMPLQLRVVFHSFVASCWGIFLNLKARTI 597
           SLVK KVRKDYP IQLTAW+FWPIVGWVNYQYMP+Q RV+FHSFVASCWGIFLNLKAR++
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKARSV 180


>ref|NP_001237665.1| uncharacterized protein LOC100527292 [Glycine max]
           gi|255632021|gb|ACU16363.1| unknown [Glycine max]
          Length = 185

 Score =  306 bits (785), Expect = 3e-81
 Identities = 142/185 (76%), Positives = 162/185 (87%)
 Frame = +1

Query: 58  MSERMKGVLKSYLQQLQEHPLRTKAITAGVLAGFSDATAQKISGIKKIQLRRLLLVMVYG 237
           MS+ +  V K YL QLQ HPLRTKAITA  LAGFSDA AQK+SG K++QLRR+LL M+YG
Sbjct: 1   MSDEVNSVFKKYLNQLQLHPLRTKAITAAFLAGFSDAVAQKLSGAKELQLRRVLLFMLYG 60

Query: 238 FAYGGPFGHFLHKVMDYIFKGKKDNTTIAKKVLLEQLTSSPWNNLVFMMYYGLVIEGRPW 417
           FAY GPFGHFLHK+MD IFKG+K N T+AKKV+LEQ+TSSPWNN +FMMYYGLVIEGRPW
Sbjct: 61  FAYSGPFGHFLHKLMDKIFKGEKGNDTVAKKVILEQITSSPWNNFLFMMYYGLVIEGRPW 120

Query: 418 SLVKTKVRKDYPLIQLTAWKFWPIVGWVNYQYMPLQLRVVFHSFVASCWGIFLNLKARTI 597
           S V  KV+KDYP +QLTAWKFWPIVGWVNYQYMPLQLRVVFHS VA+CW IFLNLKAR++
Sbjct: 121 STVINKVKKDYPSVQLTAWKFWPIVGWVNYQYMPLQLRVVFHSSVAACWAIFLNLKARSV 180

Query: 598 AVKSA 612
           A+K+A
Sbjct: 181 AIKAA 185


Top