BLASTX nr result

ID: Coptis23_contig00013831 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013831
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003595329.1| Transmembrane protein 184C [Medicago truncat...    65   6e-09
ref|XP_002516252.1| conserved hypothetical protein [Ricinus comm...    64   1e-08

>ref|XP_003595329.1| Transmembrane protein 184C [Medicago truncatula]
           gi|355484377|gb|AES65580.1| Transmembrane protein 184C
           [Medicago truncatula]
          Length = 439

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 28/37 (75%), Positives = 29/37 (78%)
 Frame = +1

Query: 1   WWQGVGIALLCAIHVLPNEGKFQIGLQDFLICTEFII 111
           WWQGVGIALLC   VLPN+GK Q GLQDFLIC E  I
Sbjct: 262 WWQGVGIALLCTFRVLPNDGKLQTGLQDFLICIEMAI 298


>ref|XP_002516252.1| conserved hypothetical protein [Ricinus communis]
           gi|223544738|gb|EEF46254.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 418

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 28/37 (75%), Positives = 30/37 (81%)
 Frame = +1

Query: 1   WWQGVGIALLCAIHVLPNEGKFQIGLQDFLICTEFII 111
           WWQGV IALLCA  +LPNEGKF+ GLQDFLIC E  I
Sbjct: 247 WWQGVDIALLCASDILPNEGKFRTGLQDFLICIEMAI 283


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