BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013815
         (623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   119   6e-25
emb|CBI25589.3| unnamed protein product [Vitis vinifera]              116   4e-24
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   116   4e-24
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co...   115   6e-24
ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   107   2e-21

>ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Cucumis sativus]
           gi|449493675|ref|XP_004159406.1| PREDICTED: 116 kDa U5
           small nuclear ribonucleoprotein component-like [Cucumis
           sativus]
          Length = 988

 Score =  119 bits (297), Expect = 6e-25
 Identities = 57/72 (79%), Positives = 62/72 (86%)
 Frame = +3

Query: 282 DHISAASVTAGGIEAIHPAAGNVYFASANSGWSFTLLSFAKLYVKLHGIPFDAAKFASRL 461
           +HISAAS TAG ++ I PAAGNV FASA +GWSFTL SFAKLYVKLHGIPFDA KFA+RL
Sbjct: 299 NHISAASSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFATRL 358

Query: 462 *GDIYYHPDTRG 497
            GD YYHPDTRG
Sbjct: 359 WGDYYYHPDTRG 370



 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +2

Query: 491 QGVDASIMKTATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLN 622
           +GVDASIMKTATL NV+YDED+YIF PL FNTLPVVK ATEPLN
Sbjct: 568 EGVDASIMKTATLSNVDYDEDVYIFRPLQFNTLPVVKTATEPLN 611


>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  116 bits (290), Expect = 4e-24
 Identities = 55/71 (77%), Positives = 62/71 (87%)
 Frame = +3

Query: 282 DHISAASVTAGGIEAIHPAAGNVYFASANSGWSFTLLSFAKLYVKLHGIPFDAAKFASRL 461
           +HISAAS TAG ++ I PAAGNV FASA++GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 242 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 301

Query: 462 *GDIYYHPDTR 494
            GD+YYHPD R
Sbjct: 302 WGDMYYHPDAR 312



 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 38/44 (86%), Positives = 42/44 (95%)
 Frame = +2

Query: 491 QGVDASIMKTATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLN 622
           +GVDASIMKTATLCN++YDED+YIF PLLFNTLPVVK ATEPLN
Sbjct: 511 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLN 554


>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
           [Vitis vinifera] gi|147858113|emb|CAN81413.1|
           hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  116 bits (290), Expect = 4e-24
 Identities = 55/71 (77%), Positives = 62/71 (87%)
 Frame = +3

Query: 282 DHISAASVTAGGIEAIHPAAGNVYFASANSGWSFTLLSFAKLYVKLHGIPFDAAKFASRL 461
           +HISAAS TAG ++ I PAAGNV FASA++GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 299 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 358

Query: 462 *GDIYYHPDTR 494
            GD+YYHPD R
Sbjct: 359 WGDMYYHPDAR 369



 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 38/44 (86%), Positives = 42/44 (95%)
 Frame = +2

Query: 491 QGVDASIMKTATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLN 622
           +GVDASIMKTATLCN++YDED+YIF PLLFNTLPVVK ATEPLN
Sbjct: 568 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLN 611


>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
           [Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
           small nuclear ribonucleoprotein component, putative
           [Ricinus communis]
          Length = 992

 Score =  115 bits (288), Expect = 6e-24
 Identities = 55/71 (77%), Positives = 61/71 (85%)
 Frame = +3

Query: 282 DHISAASVTAGGIEAIHPAAGNVYFASANSGWSFTLLSFAKLYVKLHGIPFDAAKFASRL 461
           +HI+A S TAG ++ I PAAGNV FASAN+GWSFTL SFAKLY+KLHGIPFDA KFASRL
Sbjct: 302 NHITAGSSTAGSVQVIDPAAGNVCFASANAGWSFTLQSFAKLYLKLHGIPFDADKFASRL 361

Query: 462 *GDIYYHPDTR 494
            GD YYHPDTR
Sbjct: 362 WGDWYYHPDTR 372



 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 38/45 (84%), Positives = 40/45 (88%), Gaps = 1/45 (2%)
 Frame = +2

Query: 491 QGVDASIMKTATLCNVNYD-EDIYIFMPLLFNTLPVVKMATEPLN 622
           +GVDASIMKTATLCNVNY  ED+YIF PL FNTLPVVK ATEPLN
Sbjct: 571 EGVDASIMKTATLCNVNYSYEDVYIFRPLQFNTLPVVKTATEPLN 615


>ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Glycine max]
          Length = 988

 Score =  107 bits (267), Expect = 2e-21
 Identities = 51/70 (72%), Positives = 57/70 (81%)
 Frame = +3

Query: 285 HISAASVTAGGIEAIHPAAGNVYFASANSGWSFTLLSFAKLYVKLHGIPFDAAKFASRL* 464
           HISAAS  AGG++ + P AGNV FASA +GWSFTL SFAKLY KLHGIP +A KFASRL 
Sbjct: 300 HISAASSIAGGVQVVDPVAGNVCFASATAGWSFTLQSFAKLYGKLHGIPLEANKFASRLW 359

Query: 465 GDIYYHPDTR 494
           GD Y+HPDTR
Sbjct: 360 GDYYFHPDTR 369



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 36/44 (81%), Positives = 40/44 (90%)
 Frame = +2

Query: 491 QGVDASIMKTATLCNVNYDEDIYIFMPLLFNTLPVVKMATEPLN 622
           +GVDASIMKT+TLCNV+YDED+YIF PL FNTL VVK ATEPLN
Sbjct: 568 EGVDASIMKTSTLCNVDYDEDVYIFRPLQFNTLSVVKTATEPLN 611