BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013766
         (2056 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   436   e-156
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   427   e-147
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-...   422   e-142
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2...   404   e-139
ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arab...   417   e-138

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  436 bits (1121), Expect(2) = e-156
 Identities = 217/296 (73%), Positives = 251/296 (84%)
 Frame = -1

Query: 2056 SDGQFPEVARSQTTVEVANHKLDSLISMYRKQLGVRNLDFISVSGSTHLIELPSDLRVPS 1877
            S GQFPEVA++++ V+ A  KLD LI +YRKQL + NL+F+SVSG+THLIELP D++VPS
Sbjct: 634  SSGQFPEVAKARSLVQSAKEKLDLLIGLYRKQLRMNNLEFMSVSGTTHLIELPVDVKVPS 693

Query: 1876 NWAKVNSTKKTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEGFSKYYAEFQASVQ 1697
            NW KVNSTKKT+RYHPP                  ACR AWD FL  F KY++EFQA+VQ
Sbjct: 694  NWVKVNSTKKTVRYHPPEVLSALDQLSLANEELMIACRGAWDSFLRAFDKYFSEFQAAVQ 753

Query: 1696 ALAALDCLYSFAVLSRNKNYVRPVFVDDSESVQIHIHSGRHPVLDLILQDSFVPNDTDLN 1517
            ALA LDCL+S A+LSRNKNYVRPVFV DSE VQ+HI SGRHPVL+ +LQD+FVPNDT+L+
Sbjct: 754  ALATLDCLHSLAILSRNKNYVRPVFVGDSEPVQMHICSGRHPVLETVLQDNFVPNDTNLH 813

Query: 1516 AEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVLDGIYTRMGASDNI 1337
            A+GEYC+IVTGPNMGGKSCYIRQVAL++IMAQVGSFVPASSAKL VLDGI+TRMG+SD+I
Sbjct: 814  ADGEYCEIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLCVLDGIHTRMGSSDSI 873

Query: 1336 QQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYATLHHLLGKK 1169
            QQGRSTFLEELSEAS+I+ N TSRSLVIIDELGRGTSTHDGVAIAYATLH+LL  K
Sbjct: 874  QQGRSTFLEELSEASHIIHNCTSRSLVIIDELGRGTSTHDGVAIAYATLHYLLEHK 929



 Score =  145 bits (366), Expect(2) = e-156
 Identities = 88/202 (43%), Positives = 121/202 (59%), Gaps = 7/202 (3%)
 Frame = -2

Query: 1173 KKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEI------TDSELDCN-ENME 1015
            K+CM+LFVTHYPKIVD+KN+FP SVG YHVSY+ S+ A ++      TDS+ D N + M+
Sbjct: 929  KRCMVLFVTHYPKIVDVKNEFPGSVGAYHVSYMMSQRAMDMDTDTDKTDSKSDKNAQTMD 988

Query: 1014 RGDITFLYKVVPGPSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVARRMANQQGKKL 835
              D+T+LYK+VPG S++SFG  VA+LAQLPS          A+LE ++  R+ N   +K 
Sbjct: 989  HEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCIRRANVMAAELEAMIVSRVKNSSAQK- 1047

Query: 834  LLDTESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLAAELTDACHEVFANLKCALG 655
                  T +G+ Q          A EQ+          GL     DAC E F +LK ALG
Sbjct: 1048 ------TLQGSQQSISIQSGCSRA-EQI----------GLE---EDACREFFLDLKSALG 1087

Query: 654  HSDPMKSFQSLEHASNLAVELM 589
            ++DP +S Q L+HA ++A EL+
Sbjct: 1088 NADPERSLQFLKHARSIAKELI 1109


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
            gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
            MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  427 bits (1097), Expect(2) = e-147
 Identities = 213/296 (71%), Positives = 245/296 (82%)
 Frame = -1

Query: 2056 SDGQFPEVARSQTTVEVANHKLDSLISMYRKQLGVRNLDFISVSGSTHLIELPSDLRVPS 1877
            S+GQFPEVA S   V +A  KLDSLI++YRKQL +R+L+F+SVSG+THLIELP+D++VP 
Sbjct: 625  SNGQFPEVASSNKAVHLAKEKLDSLINLYRKQLKMRSLEFMSVSGTTHLIELPADVKVPL 684

Query: 1876 NWAKVNSTKKTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEGFSKYYAEFQASVQ 1697
            NW K+NSTKK IRYHPP                   CR+AWD FL  F+K+YAEFQA +Q
Sbjct: 685  NWVKINSTKKMIRYHPPEVLTALDQLALANEELMVVCRAAWDSFLRSFAKHYAEFQAVIQ 744

Query: 1696 ALAALDCLYSFAVLSRNKNYVRPVFVDDSESVQIHIHSGRHPVLDLILQDSFVPNDTDLN 1517
            ALAALDCL+S A+LS+NKNYVRPVFVDD+E VQIHI SGRHPVL+ IL D+FVPNDT L+
Sbjct: 745  ALAALDCLHSLAILSKNKNYVRPVFVDDNEPVQIHISSGRHPVLETILLDNFVPNDTCLH 804

Query: 1516 AEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVLDGIYTRMGASDNI 1337
             +GE+CQ+VTGPNMGGKSCYIRQVAL+ +MAQVGSFVPASSAKLHVLDGIYTRMGASD+I
Sbjct: 805  VDGEHCQVVTGPNMGGKSCYIRQVALIVMMAQVGSFVPASSAKLHVLDGIYTRMGASDSI 864

Query: 1336 QQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYATLHHLLGKK 1169
            QQGRSTFLEELSE S+IL   T  SLVIIDELGRGTSTHDG AIAYATL HLL +K
Sbjct: 865  QQGRSTFLEELSETSHILRKCTGYSLVIIDELGRGTSTHDGEAIAYATLCHLLEQK 920



 Score =  125 bits (313), Expect(2) = e-147
 Identities = 81/204 (39%), Positives = 112/204 (54%), Gaps = 1/204 (0%)
 Frame = -2

Query: 1191 CTIFLAKKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEITDSELDCNENMER 1012
            C +   K+CM+LFVTHYPKI +I+  F  SVG YHVSYL +E   + TDS+ D NE    
Sbjct: 914  CHLLEQKRCMVLFVTHYPKIANIRTGFLNSVGAYHVSYLMAEKNNDATDSKFD-NE---- 968

Query: 1011 GDITFLYKVVPGPSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVARRMANQQGKKLL 832
             D+T+LYK+VPG S++SFG  VA+LAQLP+          A+LEE ++ R+ N+  K  L
Sbjct: 969  -DVTYLYKLVPGVSERSFGFKVAQLAQLPTSCIERATVMAARLEEAISCRIRNRLDKSQL 1027

Query: 831  LDTESTFE-GNVQVXXXXXXXXSAGEQLCNYSSINGTGGLAAELTDACHEVFANLKCALG 655
            L      +   +Q            +++ NY  +N T            + F N K AL 
Sbjct: 1028 LKALQIDQLQEIQEKIPESPGNFHDKRIENYEELNNT----------YEKFFLNFKSAL- 1076

Query: 654  HSDPMKSFQSLEHASNLAVELMKR 583
              D  KSFQ LE+A ++A  L+KR
Sbjct: 1077 LGDDAKSFQYLENARSIARALIKR 1100


>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
          Length = 1070

 Score =  422 bits (1086), Expect(2) = e-142
 Identities = 212/296 (71%), Positives = 247/296 (83%)
 Frame = -1

Query: 2056 SDGQFPEVARSQTTVEVANHKLDSLISMYRKQLGVRNLDFISVSGSTHLIELPSDLRVPS 1877
            S+GQFPEV +S+   ++A  +LDS+I  YRKQLG++NL+FIS+SG+THLIEL +D++VPS
Sbjct: 601  SEGQFPEVCQSREAFKLAVEQLDSMIDFYRKQLGMKNLEFISISGTTHLIELSTDVKVPS 660

Query: 1876 NWAKVNSTKKTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEGFSKYYAEFQASVQ 1697
            NW KVNSTKKTIRYHPP                  ACR+AW+ FL  FSK+YAEFQA+VQ
Sbjct: 661  NWVKVNSTKKTIRYHPPEVLTTLDKLSLAKEELTVACRAAWNNFLTDFSKHYAEFQAAVQ 720

Query: 1696 ALAALDCLYSFAVLSRNKNYVRPVFVDDSESVQIHIHSGRHPVLDLILQDSFVPNDTDLN 1517
            ALAALDCL+S A+LSRNK YV PVFVDD E VQI I SGRHPVL+  LQD+FVPNDT+++
Sbjct: 721  ALAALDCLHSLAILSRNKGYVCPVFVDDHEPVQIQISSGRHPVLETTLQDNFVPNDTNMH 780

Query: 1516 AEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVLDGIYTRMGASDNI 1337
            A+GEYCQIVTGPNMGGKSCYIRQVAL+ IMAQVGSFVPASSAKLHVLD IYTRMGASD+I
Sbjct: 781  ADGEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSAKLHVLDRIYTRMGASDSI 840

Query: 1336 QQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYATLHHLLGKK 1169
            Q GRSTFLEELSE S+IL + T  SLVIIDELGRGTSTHDG+AIA+ATLH+LL +K
Sbjct: 841  QLGRSTFLEELSETSHILNSCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQK 896



 Score =  112 bits (280), Expect(2) = e-142
 Identities = 77/197 (39%), Positives = 102/197 (51%)
 Frame = -2

Query: 1173 KKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEITDSELDCNENMERGDITFL 994
            K+ M+LFVTHYPKI  +  +FP SV  YHVS+L S +A +        N N++  D+T+L
Sbjct: 896  KRSMVLFVTHYPKIASLATEFPGSVAAYHVSHLISHDASK--------NSNLDH-DVTYL 946

Query: 993  YKVVPGPSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVARRMANQQGKKLLLDTEST 814
            YK+VPG S++SFG  VA+LAQLPS          +KLE LV  R+  +  K+LLLDT   
Sbjct: 947  YKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSTKELLLDT--- 1003

Query: 813  FEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLAAELTDACHEVFANLKCALGHSDPMKS 634
                              EQL   S          E   A  + + NLK A    D  KS
Sbjct: 1004 -----------LVIGQEKEQLMAQS----LDRPHKEFDMAYKDFYLNLKAATEDDDWAKS 1048

Query: 633  FQSLEHASNLAVELMKR 583
            F  LEHA ++A +L+ R
Sbjct: 1049 FHLLEHARSIAKKLIGR 1065


>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
            predicted protein [Populus trichocarpa]
          Length = 1092

 Score =  404 bits (1037), Expect(2) = e-139
 Identities = 206/296 (69%), Positives = 236/296 (79%)
 Frame = -1

Query: 2056 SDGQFPEVARSQTTVEVANHKLDSLISMYRKQLGVRNLDFISVSGSTHLIELPSDLRVPS 1877
            SD QFPEVAR++  V+ A  KLDSLI +YRKQL +RNL+F+SVSG+THLIELP D +VP 
Sbjct: 636  SDDQFPEVARAREAVQFAKEKLDSLIGLYRKQLQMRNLEFMSVSGTTHLIELPLDFKVPL 695

Query: 1876 NWAKVNSTKKTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEGFSKYYAEFQASVQ 1697
            NW KVNSTKK IRYHPP                    R+AWD FL GF  YYAEF+ +VQ
Sbjct: 696  NWVKVNSTKKMIRYHPPEVLTALDQLLLANEELMIVSRAAWDSFLRGFGIYYAEFRGAVQ 755

Query: 1696 ALAALDCLYSFAVLSRNKNYVRPVFVDDSESVQIHIHSGRHPVLDLILQDSFVPNDTDLN 1517
            ALA LDCL+SFA L +NKNYVRP+FVDDSE +QI+I SGRHPVL+ ILQD+FVPNDT+L 
Sbjct: 756  ALATLDCLFSFATLLKNKNYVRPMFVDDSEPLQINICSGRHPVLETILQDNFVPNDTNLC 815

Query: 1516 AEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVLDGIYTRMGASDNI 1337
            A+ EYCQIVTGPNMGGKSCYIRQVAL+++MAQVGSFVPA SAKLHVLDGIYTRMGASD+I
Sbjct: 816  ADKEYCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSAKLHVLDGIYTRMGASDSI 875

Query: 1336 QQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYATLHHLLGKK 1169
            QQGRSTFLEEL++           SLVIIDELGRGTST+DG AIAYATL+HLL +K
Sbjct: 876  QQGRSTFLEELTQ-----------SLVIIDELGRGTSTYDGEAIAYATLYHLLDQK 920



 Score =  120 bits (300), Expect(2) = e-139
 Identities = 77/207 (37%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
 Frame = -2

Query: 1173 KKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEITDSELDCNENMERGDITFL 994
            K+CM+LFVTHYPKIV+IK +FP SVG YHVSYLTSE ++   +S  D        D+T+L
Sbjct: 920  KRCMVLFVTHYPKIVEIKTEFPGSVGAYHVSYLTSEKSEGAIESTCDTE------DVTYL 973

Query: 993  YKVVPGPSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVARRMANQQGKKLLLDT--- 823
            YK+VPG S+KSFG  VA+LA+LP           A+LE +++ R+ N+Q    LL+T   
Sbjct: 974  YKLVPGVSEKSFGFKVAQLAELPPSCIRRATIMAARLEAVLSSRLGNEQ----LLETLPV 1029

Query: 822  -------ESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLAAELTDACHEVFANLKC 664
                   E+    +V++                          + + T A  E F+NLK 
Sbjct: 1030 QQQEEAQENMLRSDVRIEK------------------------SEDSTVAYREFFSNLKS 1065

Query: 663  ALGHSDPMKSFQSLEHASNLAVELMKR 583
            A+   D  +S Q LE A ++A E + +
Sbjct: 1066 AMFDDDVARSSQFLEKARSIAKEFLAK 1092


>ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arabidopsis lyrata subsp.
            lyrata] gi|297313441|gb|EFH43864.1| hypothetical protein
            ARALYDRAFT_492273 [Arabidopsis lyrata subsp. lyrata]
          Length = 1078

 Score =  417 bits (1071), Expect(2) = e-138
 Identities = 208/296 (70%), Positives = 240/296 (81%)
 Frame = -1

Query: 2056 SDGQFPEVARSQTTVEVANHKLDSLISMYRKQLGVRNLDFISVSGSTHLIELPSDLRVPS 1877
            S  QFPE+A ++  V V   KLDSLIS +RK+L +RNL+F+ VSG THLIELP D +VP 
Sbjct: 625  SSDQFPELAEARQAVLVIKEKLDSLISSFRKKLAIRNLEFLQVSGITHLIELPVDAKVPM 684

Query: 1876 NWAKVNSTKKTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEGFSKYYAEFQASVQ 1697
            NW KVNSTKKTIRYHPP                    R++WD FLE FS+YY +FQA+VQ
Sbjct: 685  NWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLESFSRYYTDFQAAVQ 744

Query: 1696 ALAALDCLYSFAVLSRNKNYVRPVFVDDSESVQIHIHSGRHPVLDLILQDSFVPNDTDLN 1517
            ALAALDCL+S A LS+NK YV PVFVDD E V+I+I SGRHPVL+ +LQD+FVPNDT L+
Sbjct: 745  ALAALDCLHSLATLSKNKKYVCPVFVDDCEPVEINIQSGRHPVLETLLQDNFVPNDTSLH 804

Query: 1516 AEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVLDGIYTRMGASDNI 1337
            AEGEYCQI+TGPNMGGKSCYIRQVAL+SIMAQVGSFVPASS KLHVLDG++TRMGASD+I
Sbjct: 805  AEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASSVKLHVLDGVFTRMGASDSI 864

Query: 1336 QQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYATLHHLLGKK 1169
            Q GRSTFLEELSEAS+I+   +SRSLVI+DELGRGTSTHDGVAIAYATL HLL +K
Sbjct: 865  QHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLLEK 920



 Score =  103 bits (256), Expect(2) = e-138
 Identities = 70/198 (35%), Positives = 97/198 (48%), Gaps = 1/198 (0%)
 Frame = -2

Query: 1185 IFLAKKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEITDSELDCNENMERGD 1006
            + L K+C++LFVTHYP+I +I N F  SVG YHVSYLTS+  +             +  D
Sbjct: 916  LLLEKRCLVLFVTHYPEIAEISNGFRGSVGTYHVSYLTSQKKK----------SGFDHDD 965

Query: 1005 ITFLYKVVPGPSDKSFGLNVARLAQLPSXXXXXXXXXXAKLE-ELVARRMANQQGKKLLL 829
            +T+LYK+V G   +SFG  VA+LAQ+PS          AKLE E+ AR    + G+    
Sbjct: 966  VTYLYKLVRGLCSRSFGFKVAQLAQIPSSCIRRAISMGAKLEAEVGARERNTRMGEA--- 1022

Query: 828  DTESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLAAELTDACHEVFANLKCALGHS 649
                  EG+ +                      G    A E   A  ++FA+LK AL   
Sbjct: 1023 ------EGHEE------------------HGAPGDWTGAEESISALGDLFADLKFALSEE 1058

Query: 648  DPMKSFQSLEHASNLAVE 595
            DP K+F+ L HA  +A +
Sbjct: 1059 DPWKAFEFLNHAWKIAAK 1076