BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013753
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134286.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT tra...    97   1e-18
ref|XP_002511644.1| ccr4-not transcription complex, putative [Ri...    97   2e-18
ref|XP_003626683.1| CCR4-NOT transcription complex subunit [Medi...    96   4e-18
ref|XP_003626682.1| CCR4-NOT transcription complex subunit [Medi...    96   4e-18
ref|XP_003530175.1| PREDICTED: CCR4-NOT transcription complex su...    93   2e-17

>ref|XP_004134286.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex
            subunit 1-like [Cucumis sativus]
          Length = 2427

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 63/118 (53%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
 Frame = +2

Query: 2    FREQVSLLFTE*CRICELPANYEASSTQFLSQLL--GLLKDIDFSEHFFRILTEISVSHC 175
            FR+QVS+LF E  RICELP   EA+   F+ QL   GLLK  D ++ FFR+LTEISV+HC
Sbjct: 1893 FRDQVSILFAEWYRICELPGANEAAFNHFILQLHQNGLLKGDDMTDRFFRLLTEISVAHC 1952

Query: 176  I-SEVPAPLAMQSPNQQL-HLSFVAVDKYAKLVSSLLKHGVLDQALKVQFLSKILSVT 343
            + SEV    A+QS  QQ+ +LSF+A+D YAKLV S+LK      + K   LS+IL+VT
Sbjct: 1953 LSSEVINSGALQSSPQQIQNLSFLAIDIYAKLVFSILK-----GSGKTALLSRILAVT 2005


>ref|XP_002511644.1| ccr4-not transcription complex, putative [Ricinus communis]
            gi|223548824|gb|EEF50313.1| ccr4-not transcription
            complex, putative [Ricinus communis]
          Length = 2330

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 60/115 (52%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
 Frame = +2

Query: 8    EQVSLLFTE*CRICELPANYEASSTQFLSQLL--GLLKDIDFSEHFFRILTEISVSHCI- 178
            ++VSLLF E  RIC+LP   +A+ST ++ QL   GLLK  D ++ FFRI+TE+SV+HC+ 
Sbjct: 1796 KKVSLLFAEWFRICDLPGANDAASTHYILQLHQNGLLKGDDMTDRFFRIITELSVAHCLS 1855

Query: 179  SEVPAPLAMQSPNQQLHLSFVAVDKYAKLVSSLLKHGVLDQALKVQFLSKILSVT 343
            SEV    A+QSP Q  +LSF+A+D YAKLV S+LK  V   + +   LSKIL+VT
Sbjct: 1856 SEVINSGALQSPQQGQNLSFLAIDIYAKLVFSILK--VEQGSNRFFLLSKILAVT 1908


>ref|XP_003626683.1| CCR4-NOT transcription complex subunit [Medicago truncatula]
            gi|355520705|gb|AET01159.1| CCR4-NOT transcription
            complex subunit [Medicago truncatula]
          Length = 2410

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 60/117 (51%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
 Frame = +2

Query: 2    FREQVSLLFTE*CRICELPANYEASSTQFLSQL--LGLLKDIDFSEHFFRILTEISVSHC 175
            FREQVS+LF E  RICELP   + +ST F+ QL   GLLK  D  + FFR+L EI+V+HC
Sbjct: 1877 FREQVSMLFAEWYRICELPGANDTASTHFIVQLHQSGLLKGDDMPDRFFRLLMEIAVAHC 1936

Query: 176  IS-EVPAPLAMQSPNQQLHLSFVAVDKYAKLVSSLLKHGVLDQALKVQFLSKILSVT 343
            +S E     A+QSP Q   +SF+A+D YAKLV S+LK          + LSKIL+VT
Sbjct: 1937 LSTEGINSGALQSPQQMPTMSFLAIDIYAKLVFSILKG-------SSKLLSKILAVT 1986


>ref|XP_003626682.1| CCR4-NOT transcription complex subunit [Medicago truncatula]
            gi|355520704|gb|AET01158.1| CCR4-NOT transcription
            complex subunit [Medicago truncatula]
          Length = 2418

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 60/117 (51%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
 Frame = +2

Query: 2    FREQVSLLFTE*CRICELPANYEASSTQFLSQL--LGLLKDIDFSEHFFRILTEISVSHC 175
            FREQVS+LF E  RICELP   + +ST F+ QL   GLLK  D  + FFR+L EI+V+HC
Sbjct: 1877 FREQVSMLFAEWYRICELPGANDTASTHFIVQLHQSGLLKGDDMPDRFFRLLMEIAVAHC 1936

Query: 176  IS-EVPAPLAMQSPNQQLHLSFVAVDKYAKLVSSLLKHGVLDQALKVQFLSKILSVT 343
            +S E     A+QSP Q   +SF+A+D YAKLV S+LK          + LSKIL+VT
Sbjct: 1937 LSTEGINSGALQSPQQMPTMSFLAIDIYAKLVFSILKG-------SSKLLSKILAVT 1986


>ref|XP_003530175.1| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine
            max]
          Length = 2424

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 61/120 (50%), Positives = 84/120 (70%), Gaps = 6/120 (5%)
 Frame = +2

Query: 2    FREQVSLLFTE*CRICELPANYEASSTQFLSQL--LGLLKDIDFSEHFFRILTEISVSHC 175
            FREQVS+LFTE  RICELP  Y+ +ST F  QL   GLLK  D ++ FFR+L E++V+HC
Sbjct: 1889 FREQVSMLFTEWYRICELPGGYDTASTHFTLQLHQNGLLKGDDLTDRFFRLLMELAVAHC 1948

Query: 176  IS-EVPAPLAMQSPNQQLHLSFVAVDKYAKLVSSLLK--HGVLDQ-ALKVQFLSKILSVT 343
            +S E+    ++QS   Q  +SF+A++ YAKLV S+LK    +L+Q + K+  LSKIL+VT
Sbjct: 1949 LSTEMINSGSLQSQPLQT-MSFLAIEIYAKLVFSILKLFGWLLEQGSNKLFLLSKILAVT 2007