BLASTX nr result
ID: Coptis23_contig00013723
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00013723
(1349 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|2... 531 e-148
ref|XP_002532083.1| pentatricopeptide repeat-containing protein,... 524 e-146
ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containi... 523 e-146
ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containi... 508 e-141
ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata] g... 508 e-141
>ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|222865192|gb|EEF02323.1|
predicted protein [Populus trichocarpa]
Length = 785
Score = 531 bits (1369), Expect = e-148
Identities = 254/350 (72%), Positives = 300/350 (85%)
Frame = +3
Query: 300 SGLTRNFSCGDNGDKVSAEFTEEIVYLDESGGVIFKGKGVRSVEPGVDDHIMVGGVKKPF 479
+ RN+ G NG+ S E+TE+I YLDESG VI+ GKG+RSVEPGVDDH+M+GG+KKP
Sbjct: 28 NSFVRNYCAGKNGEAGSGEWTEDIEYLDESGSVIYSGKGIRSVEPGVDDHVMIGGLKKPI 87
Query: 480 SNASAVSKVVEIVKRWKWGPEMETQLDKLHFVPNMSHVNQAFKEIGETDGSLSLFRWAKR 659
NASAV+K+VE+VKRWKWGPE+ETQLDKL FVPNM+HV QA K I E+D LSLF+WAKR
Sbjct: 88 LNASAVAKIVEVVKRWKWGPELETQLDKLQFVPNMTHVVQALKIINESDALLSLFKWAKR 147
Query: 660 QSWYVPNDDIYVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARA 839
Q+WYVPND+ YV+LFD LN RD+DGIQSLF+EM+ C + + SA++RV+++LA+A
Sbjct: 148 QTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDEMV--CDSIKSATQFSAYNRVLKYLAKA 205
Query: 840 EKLEVSFCCFKKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTY 1019
EKLEVSFCCFKK++DSGC+IDT TYN L+ LFLNKGLPYKAFEIYETME AHCSLDVSTY
Sbjct: 206 EKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAFEIYETMEAAHCSLDVSTY 265
Query: 1020 ELMIPCLAKSGRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQG 1199
ELMIP LAKSGRLD+A K FQEMKE+ FRP+ IFSSLVDSMGKAGRL+TSMKVYMEMQG
Sbjct: 266 ELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQG 325
Query: 1200 FGLRPSATMFVSLIESFAKAGKLETAMRLWDEMKKTGFRPNYGLYTMIVE 1349
GLRPSA M+VSLIES+ KAGKL+ A+RLWDEMK GFRPN+GLYT+I+E
Sbjct: 326 LGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIE 375
Score = 91.3 bits (225), Expect = 5e-16
Identities = 63/208 (30%), Positives = 105/208 (50%)
Frame = +3
Query: 690 YVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARAEKLEVSFCCF 869
Y L+ L D LF+EM KE N R S + S ++ + +A +LE S +
Sbjct: 265 YELMIPSLAKSGRLDAAFKLFQEM-KE--RNFRPS-LGIFSSLVDSMGKAGRLETSMKVY 320
Query: 870 KKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTYELMIPCLAKS 1049
+++ G + Y SLI + G A +++ M+ A + Y L+I AKS
Sbjct: 321 MEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKS 380
Query: 1050 GRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMF 1229
G+LD A+ F++M++ GF P +SSL++ +G++D +MK+Y M GLRP + +
Sbjct: 381 GKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLSTY 440
Query: 1230 VSLIESFAKAGKLETAMRLWDEMKKTGF 1313
+L+ A ++ A ++ EMK GF
Sbjct: 441 TALLTLLAHKKLVDVAAKILLEMKAMGF 468
>ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528243|gb|EEF30297.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 841
Score = 524 bits (1350), Expect = e-146
Identities = 252/350 (72%), Positives = 302/350 (86%)
Frame = +3
Query: 300 SGLTRNFSCGDNGDKVSAEFTEEIVYLDESGGVIFKGKGVRSVEPGVDDHIMVGGVKKPF 479
S RN+ G+ + SA++TE+I YLDESG VI+ GKG+RSVEPG+DDH+MVGG+KKPF
Sbjct: 88 SYFARNYCSGNINEGGSAKWTEDIEYLDESGSVIYSGKGIRSVEPGLDDHVMVGGLKKPF 147
Query: 480 SNASAVSKVVEIVKRWKWGPEMETQLDKLHFVPNMSHVNQAFKEIGETDGSLSLFRWAKR 659
N +AV+K+VEIVKRWKWGPE+ETQLDKL FVP+M+HV QA K I + DG LSLF+WAKR
Sbjct: 148 LNVAAVAKIVEIVKRWKWGPELETQLDKLQFVPSMTHVVQALKIINDADGMLSLFKWAKR 207
Query: 660 QSWYVPNDDIYVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARA 839
Q+WYV +D+ Y LLFD LN IRD+DGIQSLF+EM+++ S +S + A++RVIQHLA+A
Sbjct: 208 QTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQDSSKGG-ISSVYAYNRVIQHLAKA 266
Query: 840 EKLEVSFCCFKKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTY 1019
EKLE+SFCCFKK++DSGC+IDT TYN+LIT FLNKGLPYKAFEIYE+M+ A CSLD STY
Sbjct: 267 EKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCSLDASTY 326
Query: 1020 ELMIPCLAKSGRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQG 1199
ELMIP LAKSGRLD A K FQEMKE+ RP+F IFSSLVDSMGK+GRLDTSMK+YMEMQG
Sbjct: 327 ELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQG 386
Query: 1200 FGLRPSATMFVSLIESFAKAGKLETAMRLWDEMKKTGFRPNYGLYTMIVE 1349
FGLR SA+M+VSLIES+ KAGKL+TA+RLWDEMKK GFRPNYGLYT+I+E
Sbjct: 387 FGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIE 436
Score = 85.5 bits (210), Expect = 3e-14
Identities = 59/208 (28%), Positives = 103/208 (49%)
Frame = +3
Query: 690 YVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARAEKLEVSFCCF 869
Y L+ L D LF+EM KE R SF S ++ + ++ +L+ S +
Sbjct: 326 YELMIPSLAKSGRLDVAFKLFQEM-KE--RKIRPSF-GIFSSLVDSMGKSGRLDTSMKIY 381
Query: 870 KKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTYELMIPCLAKS 1049
+++ G + Y SLI + G A +++ M++A + Y L+I AKS
Sbjct: 382 MEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKS 441
Query: 1050 GRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMF 1229
G+LD A F++M + GF P +S L++ +G++D++MK+Y M GL+P + +
Sbjct: 442 GKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTY 501
Query: 1230 VSLIESFAKAGKLETAMRLWDEMKKTGF 1313
+L+ A ++ A ++ EMK GF
Sbjct: 502 TALLTLLASKKLVDVAAKILLEMKAMGF 529
>ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 523 bits (1346), Expect = e-146
Identities = 269/402 (66%), Positives = 315/402 (78%), Gaps = 21/402 (5%)
Frame = +3
Query: 207 PKIPSLNNTSH----HDFCIKNIFLSNLVTPSI------GKSGLTRNFS---CGDNGDKV 347
PK SL + SH F NI N + P + S + NFS C N +
Sbjct: 31 PKDLSLLSKSHPMFTSSFQASNIHNPNFINPFLFSLKARNPSPIFINFSRAFCSGNHHQN 90
Query: 348 SAEFT-------EEIVYLDESGGVIFKGKGVRSVEPGVDDHIMVGGVKKPFSNASAVSKV 506
S T E++ YLDESG VIF GKGVRSV+PG+DDH+MVGG+KKPF N SAV+K+
Sbjct: 91 SNRSTSSSDWNQEDVEYLDESGSVIFTGKGVRSVDPGLDDHVMVGGLKKPFLNVSAVAKI 150
Query: 507 VEIVKRWKWGPEMETQLDKLHFVPNMSHVNQAFKEIGETDGSLSLFRWAKRQSWY-VPND 683
VEIV RW+WGPE+ETQLDKLHFVPNMSHV QA K + +TD SLSLFRWAKRQ WY + ND
Sbjct: 151 VEIVNRWRWGPELETQLDKLHFVPNMSHVIQALKIVTDTDASLSLFRWAKRQPWYSMLND 210
Query: 684 DIYVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARAEKLEVSFC 863
+ Y LLFDRLN RD+D IQSLF+EMI++ +N+ +S + A ++V++ LA+AEKLEV+FC
Sbjct: 211 ECYALLFDRLNQSRDFDAIQSLFDEMIRDSGDNNGVSSVIACNQVVRDLAKAEKLEVAFC 270
Query: 864 CFKKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTYELMIPCLA 1043
CFKK++DSGC+IDT TYNSLITLFLNKGLPYKAFE+YE+ME A C LD STYELMIP LA
Sbjct: 271 CFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLA 330
Query: 1044 KSGRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQGFGLRPSAT 1223
KSGRLD+A K FQEMKEK RP+F +F+SLVDSMGKAGRLDTSMKVYMEMQGFGLRPSAT
Sbjct: 331 KSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSAT 390
Query: 1224 MFVSLIESFAKAGKLETAMRLWDEMKKTGFRPNYGLYTMIVE 1349
M+VSLIESF KAGKLETA+R+WDEMKK GFRPNYGLYTM+VE
Sbjct: 391 MYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVE 432
Score = 92.8 bits (229), Expect = 2e-16
Identities = 58/208 (27%), Positives = 108/208 (51%)
Frame = +3
Query: 690 YVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARAEKLEVSFCCF 869
Y L+ L D LF+EM ++ N R SF+ + ++ + +A +L+ S +
Sbjct: 322 YELMIPSLAKSGRLDAAFKLFQEMKEK---NLRPSFL-VFASLVDSMGKAGRLDTSMKVY 377
Query: 870 KKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTYELMIPCLAKS 1049
+++ G + Y SLI F+ G A I++ M++A + Y +++ AKS
Sbjct: 378 MEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKS 437
Query: 1050 GRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMF 1229
G+L++A+ F +M++ GF P +S L++ +G++D++MK+Y M GLRP + +
Sbjct: 438 GKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTY 497
Query: 1230 VSLIESFAKAGKLETAMRLWDEMKKTGF 1313
+L+ A ++ A ++ EMK GF
Sbjct: 498 TALLTLLANKKLVDVAAKVLLEMKAMGF 525
>ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Cucumis sativus]
gi|449490234|ref|XP_004158545.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Cucumis sativus]
Length = 823
Score = 508 bits (1307), Expect = e-141
Identities = 244/347 (70%), Positives = 295/347 (85%)
Frame = +3
Query: 309 TRNFSCGDNGDKVSAEFTEEIVYLDESGGVIFKGKGVRSVEPGVDDHIMVGGVKKPFSNA 488
TR++ G E+TE+I YLDESG VIF GKGVRSVEPGVDDH+MVGG+KKPF NA
Sbjct: 68 TRSYCSGKESGNGGREWTEDIEYLDESGSVIFSGKGVRSVEPGVDDHVMVGGLKKPFLNA 127
Query: 489 SAVSKVVEIVKRWKWGPEMETQLDKLHFVPNMSHVNQAFKEIGETDGSLSLFRWAKRQSW 668
SAV+K+VE+V+RWKWGPE+E+QL+KL FVPNM+H+ Q K I + + SLSLFRWAKRQSW
Sbjct: 128 SAVAKIVEVVRRWKWGPELESQLEKLQFVPNMTHITQVLKIIDDAEASLSLFRWAKRQSW 187
Query: 669 YVPNDDIYVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARAEKL 848
Y PND+ Y LLFD LN RD+D IQ LF+E++++ S+++ +SF SA++RVIQ+LA+AEKL
Sbjct: 188 YSPNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSF-SAYNRVIQYLAKAEKL 246
Query: 849 EVSFCCFKKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTYELM 1028
EVSFCCFKKI DSG ++DT TYNSLITLFLNKGLPYKAFEIYE+M A CSLD ST+ELM
Sbjct: 247 EVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMAGAECSLDASTFELM 306
Query: 1029 IPCLAKSGRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQGFGL 1208
IPCLAKSGRLD+A+K FQEMKEK +RP ++SSLVDSMGKAGRLDTSMK+YMEMQ L
Sbjct: 307 IPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLEL 366
Query: 1209 RPSATMFVSLIESFAKAGKLETAMRLWDEMKKTGFRPNYGLYTMIVE 1349
RPSA MFVSLIES KAGKL+TA++LWD+MK+ GF+PN+GLY+M+VE
Sbjct: 367 RPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVVE 413
Score = 76.6 bits (187), Expect = 1e-11
Identities = 49/194 (25%), Positives = 91/194 (46%)
Frame = +3
Query: 732 DGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARAEKLEVSFCCFKKIRDSGCQIDTPT 911
D LF+EM + +S ++ + +A +L+ S + +++ +
Sbjct: 317 DAAMKLFQEM----KEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRPSALM 372
Query: 912 YNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTYELMIPCLAKSGRLDSALKFFQEMK 1091
+ SLI + G A ++++ M+ A + Y +++ AKSG+LD A+ F EM+
Sbjct: 373 FVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVFTEME 432
Query: 1092 EKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMFVSLIESFAKAGKLE 1271
+ GF P + L++ +G +D +MK+Y M GLR + SL+ A ++
Sbjct: 433 KAGFLPIPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGLRLGLNTYTSLLTLLANKKLID 492
Query: 1272 TAMRLWDEMKKTGF 1313
A ++ EMK GF
Sbjct: 493 IAAKVLLEMKAMGF 506
>ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata
subsp. lyrata]
Length = 832
Score = 508 bits (1307), Expect = e-141
Identities = 243/359 (67%), Positives = 302/359 (84%)
Frame = +3
Query: 273 NLVTPSIGKSGLTRNFSCGDNGDKVSAEFTEEIVYLDESGGVIFKGKGVRSVEPGVDDHI 452
N V + + R F +G S+ +TEE+ YLDESG V+ GKG+RSVEPG+DDH+
Sbjct: 65 NFVGLTTQSRSIVRRFCSEKSGGSESSGWTEEVEYLDESGSVLHSGKGIRSVEPGLDDHV 124
Query: 453 MVGGVKKPFSNASAVSKVVEIVKRWKWGPEMETQLDKLHFVPNMSHVNQAFKEIGETDGS 632
MVGG+KKP+ NASAV+K+VE+V+RWKWGPE+ETQLDKL FVPNM H+ Q+ K + E D +
Sbjct: 125 MVGGLKKPYMNASAVAKIVEVVQRWKWGPELETQLDKLQFVPNMVHITQSLKIVKEVDAA 184
Query: 633 LSLFRWAKRQSWYVPNDDIYVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHS 812
LSLFRWAK+Q WY+P+D+ YV+LFD LN RD+ GIQSLFEEM+++ S++ +SF A++
Sbjct: 185 LSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSF-GAYN 243
Query: 813 RVIQHLARAEKLEVSFCCFKKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEA 992
+VIQ+LA+AEKLEV+FCCFKK ++SGC+IDT TYN+L+ LFLNKGLPYKAFEIYE+ME+
Sbjct: 244 QVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKT 303
Query: 993 HCSLDVSTYELMIPCLAKSGRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTS 1172
LD STYEL+IP LAKSGRLD+A K FQ+MKE+ RP+F +FSSLVDSMGKAGRLDTS
Sbjct: 304 DSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTS 363
Query: 1173 MKVYMEMQGFGLRPSATMFVSLIESFAKAGKLETAMRLWDEMKKTGFRPNYGLYTMIVE 1349
MKVYMEMQGFG RPSATMFVSLI+S+AKAGKL+TA+RLWDEMKK+GFRPN+GLYTMI+E
Sbjct: 364 MKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIE 422
Score = 85.5 bits (210), Expect = 3e-14
Identities = 57/208 (27%), Positives = 107/208 (51%)
Frame = +3
Query: 690 YVLLFDRLNLIRDYDGIQSLFEEMIKECSNNDRMSFMSAHSRVIQHLARAEKLEVSFCCF 869
Y L+ L D LF++M KE R SF S S ++ + +A +L+ S +
Sbjct: 312 YELIIPSLAKSGRLDAAFKLFQQM-KE--RKLRPSF-SVFSSLVDSMGKAGRLDTSMKVY 367
Query: 870 KKIRDSGCQIDTPTYNSLITLFLNKGLPYKAFEIYETMEEAHCSLDVSTYELMIPCLAKS 1049
+++ G + + SLI + G A +++ M+++ + Y ++I AKS
Sbjct: 368 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKS 427
Query: 1050 GRLDSALKFFQEMKEKGFRPNFPIFSSLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMF 1229
G+L+ A+ F++M++ GF P +S L++ +G++D++MK+Y M GLRP + +
Sbjct: 428 GKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSY 487
Query: 1230 VSLIESFAKAGKLETAMRLWDEMKKTGF 1313
+SL+ A ++ A ++ EMK G+
Sbjct: 488 ISLLTLLANKRLVDVAGKILLEMKAMGY 515