BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013720
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319474.1| predicted protein [Populus trichocarpa] gi|2...   282   2e-74
gb|ABK96584.1| unknown [Populus trichocarpa x Populus deltoides]      282   2e-74
gb|ABK95651.1| unknown [Populus trichocarpa]                          282   2e-74
ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7...   281   5e-74
emb|CAA71589.1| g5bf [Arabidopsis thaliana]                           281   5e-74

>ref|XP_002319474.1| predicted protein [Populus trichocarpa] gi|222857850|gb|EEE95397.1|
           predicted protein [Populus trichocarpa]
          Length = 380

 Score =  282 bits (721), Expect = 2e-74
 Identities = 131/141 (92%), Positives = 139/141 (98%)
 Frame = -3

Query: 423 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 244
           AVDPKSRHKGKLETE+LL+SR VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 181 AVDPKSRHKGKLETESLLESRGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 243 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 64
           SG+Q+TQLGHVKDLA AFIQVLGNEKAS+Q+FNISGEKYVTFDGLAKACAKAAGFPEPEI
Sbjct: 241 SGIQMTQLGHVKDLAKAFIQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAAGFPEPEI 300

Query: 63  VHYNPKEFDFGKKKAFPFRDQ 1
           VHYNPK+FDFGKKKAFPFRDQ
Sbjct: 301 VHYNPKDFDFGKKKAFPFRDQ 321


>gb|ABK96584.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 380

 Score =  282 bits (721), Expect = 2e-74
 Identities = 131/141 (92%), Positives = 139/141 (98%)
 Frame = -3

Query: 423 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 244
           AVDPKSRHKGKLETE+LL+SR VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 181 AVDPKSRHKGKLETESLLESRGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 243 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 64
           SG+Q+TQLGHVKDLA AFIQVLGNEKAS+Q+FNISGEKYVTFDGLAKACAKAAGFPEPEI
Sbjct: 241 SGIQMTQLGHVKDLAKAFIQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAAGFPEPEI 300

Query: 63  VHYNPKEFDFGKKKAFPFRDQ 1
           VHYNPK+FDFGKKKAFPFRDQ
Sbjct: 301 VHYNPKDFDFGKKKAFPFRDQ 321


>gb|ABK95651.1| unknown [Populus trichocarpa]
          Length = 380

 Score =  282 bits (721), Expect = 2e-74
 Identities = 131/141 (92%), Positives = 139/141 (98%)
 Frame = -3

Query: 423 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 244
           AVDPKSRHKGKLETE+LL+SR VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 181 AVDPKSRHKGKLETESLLESRGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 243 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 64
           SG+Q+TQLGHVKDLA AFIQVLGNEKAS+Q+FNISGEKYVTFDGLAKACAKAAGFPEPEI
Sbjct: 241 SGIQMTQLGHVKDLAKAFIQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAAGFPEPEI 300

Query: 63  VHYNPKEFDFGKKKAFPFRDQ 1
           VHYNPK+FDFGKKKAFPFRDQ
Sbjct: 301 VHYNPKDFDFGKKKAFPFRDQ 321


>ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana]
           gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
           Full=Chloroplast stem-loop binding protein of 41 kDa b,
           chloroplastic; Short=CSP41-b; AltName:
           Full=Heteroglycan-interacting protein 1.3; AltName:
           Full=Protein CHLOROPLAST RNA BINDING; AltName:
           Full=Protein Gb5f; Flags: Precursor
           gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
           [Arabidopsis thaliana]
           gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
           [Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
           Identical to gb|Y10557 g5bf gene from Arabidopsis
           thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
           gb|T22425, gb|N64934 and gb|T46767 come from this gene
           [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|17979099|gb|AAL47493.1| putative RNA-binding protein
           [Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA
           binding protein [Arabidopsis thaliana]
          Length = 378

 Score =  281 bits (718), Expect = 5e-74
 Identities = 131/141 (92%), Positives = 138/141 (97%)
 Frame = -3

Query: 423 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 244
           AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN
Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 243 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 64
           SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI
Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 63  VHYNPKEFDFGKKKAFPFRDQ 1
           VHYNPKEFDFGKKKAFPFRDQ
Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQ 320


>emb|CAA71589.1| g5bf [Arabidopsis thaliana]
          Length = 378

 Score =  281 bits (718), Expect = 5e-74
 Identities = 131/141 (92%), Positives = 138/141 (97%)
 Frame = -3

Query: 423 AVDPKSRHKGKLETENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 244
           AVDPKSRHKGKLETE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN
Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 243 SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEI 64
           SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPEI
Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 63  VHYNPKEFDFGKKKAFPFRDQ 1
           VHYNPKEFDFGKKKAFPFRDQ
Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQ 320