BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013687
         (905 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su...   347   2e-93
dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]    346   4e-93
dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgar...   346   5e-93
ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su...   344   2e-92
ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polype...   343   2e-92

>ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Brachypodium distachyon]
          Length = 177

 Score =  347 bits (891), Expect = 2e-93
 Identities = 169/176 (96%), Positives = 175/176 (99%)
 Frame = -1

Query: 821 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 642
           MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 641 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 462
           +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 461 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 294
           SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176


>dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 236

 Score =  346 bits (888), Expect = 4e-93
 Identities = 168/177 (94%), Positives = 175/177 (98%)
 Frame = -1

Query: 824 KMFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLI 645
           +MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLI
Sbjct: 59  EMFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLI 118

Query: 644 RDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF 465
           R+GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF
Sbjct: 119 REGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF 178

Query: 464 QSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 294
           QSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPG A
Sbjct: 179 QSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGGA 235


>dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 177

 Score =  346 bits (887), Expect = 5e-93
 Identities = 168/176 (95%), Positives = 174/176 (98%)
 Frame = -1

Query: 821 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 642
           MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 641 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 462
           +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 461 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 294
           SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPG A
Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGGA 176


>ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449518487|ref|XP_004166273.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 176

 Score =  344 bits (882), Expect = 2e-92
 Identities = 167/176 (94%), Positives = 173/176 (98%)
 Frame = -1

Query: 821 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 642
           MFFHIVLERNMQLHPRHFG NLRE LV+KLMKDVEGTCSGRHGFVVAITG+++IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 641 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 462
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 461 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 294
           SGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176


>ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
           gi|242056199|ref|XP_002457245.1| hypothetical protein
           SORBIDRAFT_03g003990 [Sorghum bicolor]
           gi|242090461|ref|XP_002441063.1| hypothetical protein
           SORBIDRAFT_09g019690 [Sorghum bicolor]
           gi|194708012|gb|ACF88090.1| unknown [Zea mays]
           gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase
           II 19 kDa polypeptide [Zea mays]
           gi|241929220|gb|EES02365.1| hypothetical protein
           SORBIDRAFT_03g003990 [Sorghum bicolor]
           gi|241946348|gb|EES19493.1| hypothetical protein
           SORBIDRAFT_09g019690 [Sorghum bicolor]
           gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase
           II polypeptide [Zea mays]
          Length = 177

 Score =  343 bits (881), Expect = 2e-92
 Identities = 166/176 (94%), Positives = 175/176 (99%)
 Frame = -1

Query: 821 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 642
           MFFHIVLERNMQLHPRHFGP+LR+KLV+KL+KDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 641 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 462
           +GTG+VTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 461 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 294
           SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176