BLASTX nr result
ID: Coptis23_contig00013672
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00013672
(749 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloro... 162 3e-40
gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea bras... 167 2e-39
ref|XP_002513824.1| 30S ribosomal protein S13, putative [Ricinus... 163 4e-38
ref|NP_001237689.1| uncharacterized protein LOC100499902 [Glycin... 157 8e-38
ref|NP_001236787.1| uncharacterized protein LOC100500355 [Glycin... 155 2e-37
>ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis
vinifera] gi|302141873|emb|CBI19076.3| unnamed protein
product [Vitis vinifera]
Length = 167
Score = 162 bits (410), Expect(2) = 3e-40
Identities = 89/147 (60%), Positives = 96/147 (65%)
Frame = +1
Query: 193 PKFNGLSIKCARVGGVEIPNNKRVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEE 372
PKF GLSIKCARVGGVEIPN+KRVEYSLQY+HGIGR+R++QIL DL MENKITK LSEEE
Sbjct: 37 PKFGGLSIKCARVGGVEIPNSKRVEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEE 96
Query: 373 LITIRDEVSKYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 552
LIT+RDEVSKYM L
Sbjct: 97 LITLRDEVSKYM-----------------IEGDLRRFNALAIRRLKEIQCYRGIRHIQGL 139
Query: 553 PCRGQRTKNNCRTLKGKRVAIAGKKKA 633
PCRGQRTKNNCRTLKGKRV+IAGKKKA
Sbjct: 140 PCRGQRTKNNCRTLKGKRVSIAGKKKA 166
Score = 29.3 bits (64), Expect(2) = 3e-40
Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 21 MAQAVAMPIASSLSII--YKSPTTPSN 95
MAQA+A P+A SLS+I ++P +PSN
Sbjct: 1 MAQALATPLAPSLSLICNTRNPLSPSN 27
>gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
Length = 168
Score = 167 bits (423), Expect = 2e-39
Identities = 89/149 (59%), Positives = 99/149 (66%)
Frame = +1
Query: 193 PKFNGLSIKCARVGGVEIPNNKRVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEE 372
PK +GLSI+CARVGGVEIPNNKRVEYSLQY+HG+GR+RARQIL+DL+M+NKITK LSEEE
Sbjct: 37 PKIHGLSIQCARVGGVEIPNNKRVEYSLQYIHGVGRSRARQILSDLSMQNKITKDLSEEE 96
Query: 373 LITIRDEVSKYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 552
LIT+RDEVSKYM L
Sbjct: 97 LITLRDEVSKYM-----------------IEGDLRRFNALNIRGLKEIQCHRGIRHIQGL 139
Query: 553 PCRGQRTKNNCRTLKGKRVAIAGKKKAPR 639
PCRGQRTKNNCRTLKGKRV +AGKKKAPR
Sbjct: 140 PCRGQRTKNNCRTLKGKRVTVAGKKKAPR 168
>ref|XP_002513824.1| 30S ribosomal protein S13, putative [Ricinus communis]
gi|223546910|gb|EEF48407.1| 30S ribosomal protein S13,
putative [Ricinus communis]
Length = 290
Score = 163 bits (412), Expect = 4e-38
Identities = 86/146 (58%), Positives = 97/146 (66%)
Frame = +1
Query: 202 NGLSIKCARVGGVEIPNNKRVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEELIT 381
+GLSI+CARVGGVEIPNNKR+EYSLQY+HG+GR+RARQIL+DL+MENKITK+LSEEELIT
Sbjct: 162 HGLSIRCARVGGVEIPNNKRIEYSLQYIHGVGRSRARQILSDLSMENKITKELSEEELIT 221
Query: 382 IRDEVSKYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPCR 561
+RDEVSKYM LPCR
Sbjct: 222 LRDEVSKYM-----------------IEGDLRRFNALNIRRLKEIQCYRGVRHIQGLPCR 264
Query: 562 GQRTKNNCRTLKGKRVAIAGKKKAPR 639
GQRTKNNCRTLKGKRV +AGKKK PR
Sbjct: 265 GQRTKNNCRTLKGKRVTVAGKKKTPR 290
Score = 83.2 bits (204), Expect = 5e-14
Identities = 50/137 (36%), Positives = 68/137 (49%)
Frame = +1
Query: 196 KFNGLSIKCARVGGVEIPNNKRVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEEL 375
+F ++C RVG EIP++K++ ++LQ++ GIGR RA QIL DL++ENK TK L+ EL
Sbjct: 27 QFRYQRVQCLRVGNAEIPDDKQLRFALQHIRGIGRQRAHQILIDLSLENKRTKDLTGLEL 86
Query: 376 ITIRDEVSKYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLP 555
T+R+EVSKY+ LP
Sbjct: 87 HTLRNEVSKYL-----------------IGEELTRCVRSDIQRLADIQCYRGYNHACLLP 129
Query: 556 CRGQRTKNNCRTLKGKR 606
CRGQ T+ N RT KG R
Sbjct: 130 CRGQLTRTNARTRKGMR 146
>ref|NP_001237689.1| uncharacterized protein LOC100499902 [Glycine max]
gi|255627531|gb|ACU14110.1| unknown [Glycine max]
Length = 162
Score = 157 bits (397), Expect(2) = 8e-38
Identities = 83/146 (56%), Positives = 94/146 (64%)
Frame = +1
Query: 193 PKFNGLSIKCARVGGVEIPNNKRVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEE 372
PKF GLSIKC RVGGVEIPNNKR+EYSLQ++HG+GRTRA+QIL D+ M+NKITK+L+EEE
Sbjct: 33 PKFQGLSIKCVRVGGVEIPNNKRIEYSLQHIHGVGRTRAKQILCDIQMDNKITKELTEEE 92
Query: 373 LITIRDEVSKYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 552
LIT+RDEVSKYM L
Sbjct: 93 LITLRDEVSKYM-----------------IEGDLRRFNAVNIKRLKDIQCYRGIRHIQGL 135
Query: 553 PCRGQRTKNNCRTLKGKRVAIAGKKK 630
PCRGQRTKNNCRTLKGK+VAI GKKK
Sbjct: 136 PCRGQRTKNNCRTLKGKKVAITGKKK 161
Score = 26.2 bits (56), Expect(2) = 8e-38
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 21 MAQAVAMPIASSLSIIYKS 77
MAQ +AMP+A SL+II S
Sbjct: 1 MAQTLAMPVAPSLAIISNS 19
>ref|NP_001236787.1| uncharacterized protein LOC100500355 [Glycine max]
gi|255630109|gb|ACU15408.1| unknown [Glycine max]
Length = 162
Score = 155 bits (393), Expect(2) = 2e-37
Identities = 83/146 (56%), Positives = 93/146 (63%)
Frame = +1
Query: 193 PKFNGLSIKCARVGGVEIPNNKRVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEE 372
PK G SIKC RVGGVEIPNNKR+EYSLQY+HG+GRTRA+QIL D+ M+NKITK+L+EEE
Sbjct: 33 PKVQGSSIKCVRVGGVEIPNNKRIEYSLQYIHGVGRTRAKQILCDIQMDNKITKELTEEE 92
Query: 373 LITIRDEVSKYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 552
LIT+RDEVSKYM L
Sbjct: 93 LITLRDEVSKYM-----------------IEGDLRRFNAVNIKRLKDIQCYRGIRHIQGL 135
Query: 553 PCRGQRTKNNCRTLKGKRVAIAGKKK 630
PCRGQRTKNNCRTLKGK+VAIAGKKK
Sbjct: 136 PCRGQRTKNNCRTLKGKKVAIAGKKK 161
Score = 26.2 bits (56), Expect(2) = 2e-37
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 21 MAQAVAMPIASSLSIIYKS 77
MAQ +AMP+A SL+II S
Sbjct: 1 MAQTLAMPVAPSLAIISNS 19