BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013515
         (1086 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal doma...   552   e-155
emb|CBI35690.3| unnamed protein product [Vitis vinifera]              552   e-155
ref|XP_002519032.1| double-stranded RNA binding protein, putativ...   549   e-154
ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|2...   549   e-154
ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal doma...   547   e-153

>ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1
            [Vitis vinifera]
          Length = 860

 Score =  552 bits (1422), Expect = e-155
 Identities = 278/358 (77%), Positives = 305/358 (85%), Gaps = 4/358 (1%)
 Frame = +2

Query: 23   KEIRISHFSKPSERCTPLSVLHTISNEGVSFKMESKG----DLMLGSLHSTLLTENKTAI 190
            KEIRISH+S+PSERC PL+VLHTI++ GV FKMES      D  L  LHST + ENKTA+
Sbjct: 29   KEIRISHYSQPSERCPPLAVLHTITSCGVCFKMESSKAQSQDTPLYLLHSTCIRENKTAV 88

Query: 191  MLLGEEELHLVAMSSRNNSEQNFYFWCFIVGNGRYASCLVMLNLRCLGIVFDLDETLIVA 370
            M LGEEELHLVAM S+    Q   FW F V  G Y+SCLVMLNLRCLGIVFDLDETLIVA
Sbjct: 89   MSLGEEELHLVAMYSKKKDGQYPCFWGFNVALGLYSSCLVMLNLRCLGIVFDLDETLIVA 148

Query: 371  NTMRSFEDRIDALQRKISTEIDRHRIDGMLTEIKRYNDDKAILKQYVENDQIVDDGLIFK 550
            NTMRSFEDRIDALQRKI+TE+D  RI GM  E++RY DD+ ILKQY ENDQ+V++G +FK
Sbjct: 149  NTMRSFEDRIDALQRKINTEVDPQRISGMAAEVRRYQDDRNILKQYAENDQVVENGKLFK 208

Query: 551  IQHEVVPALSDNYPAIIRPLIRLPEKNIILTRINPTVRDTSVLVRMRPAWEDLRNYLTAR 730
             Q E+VPALSDN+  I+RPLIRL EKNIILTRINP +RDTSVLVR+RPAWEDLR+YLTAR
Sbjct: 209  TQPEIVPALSDNHQPIVRPLIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLTAR 268

Query: 731  GRKRFEVYVCTMAEKDYALEMWRLLDPGLNLINSTELLDRIVCVRAGSRKSLFNVFHDGI 910
            GRKRFEVYVCTMAE+DYALEMWRLLDP  NLINS ELLDRIVCV++GSRKSLFNVF DGI
Sbjct: 269  GRKRFEVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIVCVKSGSRKSLFNVFQDGI 328

Query: 911  CHPKMALVIDDRLKVWDEKDQLRVHVVPPFAPYYAPQAEVNNTIPVLCVARNVACNVR 1084
            CHPKMALVIDDRLKVWDEKDQ RVHVVP FAPYYAPQAE NN I VLCVARNVACNVR
Sbjct: 329  CHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEANNAISVLCVARNVACNVR 386


>emb|CBI35690.3| unnamed protein product [Vitis vinifera]
          Length = 788

 Score =  552 bits (1422), Expect = e-155
 Identities = 278/358 (77%), Positives = 305/358 (85%), Gaps = 4/358 (1%)
 Frame = +2

Query: 23   KEIRISHFSKPSERCTPLSVLHTISNEGVSFKMESKG----DLMLGSLHSTLLTENKTAI 190
            KEIRISH+S+PSERC PL+VLHTI++ GV FKMES      D  L  LHST + ENKTA+
Sbjct: 29   KEIRISHYSQPSERCPPLAVLHTITSCGVCFKMESSKAQSQDTPLYLLHSTCIRENKTAV 88

Query: 191  MLLGEEELHLVAMSSRNNSEQNFYFWCFIVGNGRYASCLVMLNLRCLGIVFDLDETLIVA 370
            M LGEEELHLVAM S+    Q   FW F V  G Y+SCLVMLNLRCLGIVFDLDETLIVA
Sbjct: 89   MSLGEEELHLVAMYSKKKDGQYPCFWGFNVALGLYSSCLVMLNLRCLGIVFDLDETLIVA 148

Query: 371  NTMRSFEDRIDALQRKISTEIDRHRIDGMLTEIKRYNDDKAILKQYVENDQIVDDGLIFK 550
            NTMRSFEDRIDALQRKI+TE+D  RI GM  E++RY DD+ ILKQY ENDQ+V++G +FK
Sbjct: 149  NTMRSFEDRIDALQRKINTEVDPQRISGMAAEVRRYQDDRNILKQYAENDQVVENGKLFK 208

Query: 551  IQHEVVPALSDNYPAIIRPLIRLPEKNIILTRINPTVRDTSVLVRMRPAWEDLRNYLTAR 730
             Q E+VPALSDN+  I+RPLIRL EKNIILTRINP +RDTSVLVR+RPAWEDLR+YLTAR
Sbjct: 209  TQPEIVPALSDNHQPIVRPLIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLTAR 268

Query: 731  GRKRFEVYVCTMAEKDYALEMWRLLDPGLNLINSTELLDRIVCVRAGSRKSLFNVFHDGI 910
            GRKRFEVYVCTMAE+DYALEMWRLLDP  NLINS ELLDRIVCV++GSRKSLFNVF DGI
Sbjct: 269  GRKRFEVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIVCVKSGSRKSLFNVFQDGI 328

Query: 911  CHPKMALVIDDRLKVWDEKDQLRVHVVPPFAPYYAPQAEVNNTIPVLCVARNVACNVR 1084
            CHPKMALVIDDRLKVWDEKDQ RVHVVP FAPYYAPQAE NN I VLCVARNVACNVR
Sbjct: 329  CHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEANNAISVLCVARNVACNVR 386


>ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis]
            gi|223541695|gb|EEF43243.1| double-stranded RNA binding
            protein, putative [Ricinus communis]
          Length = 978

 Score =  549 bits (1415), Expect = e-154
 Identities = 274/359 (76%), Positives = 308/359 (85%), Gaps = 5/359 (1%)
 Frame = +2

Query: 23   KEIRISHFSKPSERCTPLSVLHTISNEGVSFKMESKGDLMLGS----LHSTLLTENKTAI 190
            K IRISHFS+ SERC PL+VLHTI+  G+ FKMESK  + L +    LHS+ + E+KTA+
Sbjct: 50   KGIRISHFSQASERCPPLAVLHTITTNGICFKMESKNSVSLDTPLHLLHSSCIQESKTAV 109

Query: 191  MLL-GEEELHLVAMSSRNNSEQNFYFWCFIVGNGRYASCLVMLNLRCLGIVFDLDETLIV 367
            +LL G EELHLVAM SRN+  Q   FW F + +G Y SCLVMLNLRCLGIVFDLDETLIV
Sbjct: 110  VLLQGGEELHLVAMFSRNDERQYPCFWAFNISSGLYDSCLVMLNLRCLGIVFDLDETLIV 169

Query: 368  ANTMRSFEDRIDALQRKISTEIDRHRIDGMLTEIKRYNDDKAILKQYVENDQIVDDGLIF 547
            ANTMRSFEDRI+ALQRKISTE+D  RI GML+E+KRY DDK ILKQYV+NDQ+V++G + 
Sbjct: 170  ANTMRSFEDRIEALQRKISTELDPQRISGMLSEVKRYQDDKTILKQYVDNDQVVENGRVI 229

Query: 548  KIQHEVVPALSDNYPAIIRPLIRLPEKNIILTRINPTVRDTSVLVRMRPAWEDLRNYLTA 727
            K Q EVVPALSDN+  I+RPLIRL E+NIILTRINP +RDTSVLVR+RPAWE+LR+YLTA
Sbjct: 230  KTQFEVVPALSDNHQTIVRPLIRLQERNIILTRINPQIRDTSVLVRLRPAWEELRSYLTA 289

Query: 728  RGRKRFEVYVCTMAEKDYALEMWRLLDPGLNLINSTELLDRIVCVRAGSRKSLFNVFHDG 907
            RGRKRFEVYVCTMAE+DYALEMWRLLDP  NLINS ELLDRIVCV++G RKSLFNVF DG
Sbjct: 290  RGRKRFEVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIVCVKSGLRKSLFNVFQDG 349

Query: 908  ICHPKMALVIDDRLKVWDEKDQLRVHVVPPFAPYYAPQAEVNNTIPVLCVARNVACNVR 1084
            ICHPKMALVIDDRLKVWDEKDQ RVHVVP FAPYYAPQAE NN +PVLCVARNVACNVR
Sbjct: 350  ICHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEANNAVPVLCVARNVACNVR 408


>ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1|
            predicted protein [Populus trichocarpa]
          Length = 967

 Score =  549 bits (1414), Expect = e-154
 Identities = 280/366 (76%), Positives = 310/366 (84%), Gaps = 12/366 (3%)
 Frame = +2

Query: 23   KEIRISHFSKPSERCTPLSVLHTISNEGVSFKME----------SKGDLMLGSLHSTLLT 172
            KEIRISHFS+ SERC PL+VLHTI++ GV FKME          S+ +  L  LHS+ + 
Sbjct: 43   KEIRISHFSQTSERCPPLAVLHTITSIGVCFKMEESTSSSTTKISQQESPLHLLHSSCIQ 102

Query: 173  ENKTAIMLLGEEELHLVAMSSRNNSEQNFYFWCFIVGNGRYASCLVMLNLRCLGIVFDLD 352
            ENKTA+M LG EELHLVAM SR+N  Q+  FW F V  G Y SCLVMLNLRCLGIVFDLD
Sbjct: 103  ENKTAVMHLGGEELHLVAMPSRSNERQHPCFWGFSVAPGLYDSCLVMLNLRCLGIVFDLD 162

Query: 353  ETLIVANTMRSFEDRIDALQRKISTEIDRHRIDGMLTEIKRYNDDKAILKQYVENDQIVD 532
            ETLIVANTMRSFEDRIDALQRKISTE+D  RI GML+E+KRY+DDK ILKQYVENDQ+V+
Sbjct: 163  ETLIVANTMRSFEDRIDALQRKISTEVDPQRILGMLSEVKRYHDDKNILKQYVENDQVVE 222

Query: 533  DGLIFKIQHEVVPALSDNYPAIIRPLIRLPEKNIILTRINPTVRDTSVLVRMRPAWEDLR 712
            +G + K Q EVVPALSDN+  ++RPLIRL EKNIILTRINP +RDTSVLVR+RPAWEDLR
Sbjct: 223  NGKVIKTQSEVVPALSDNHQPMVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLR 282

Query: 713  NYLTARGRKRFEVYVCTMAEKDYALEMWRLLDPGLNLINSTELLDRIVCVRAGS--RKSL 886
            +YLTARGRKRFEVYVCTMAE+DYALEMWRLLDP  NLINS ELLDRIVCV++G   RKSL
Sbjct: 283  SYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIVCVKSGKCLRKSL 342

Query: 887  FNVFHDGICHPKMALVIDDRLKVWDEKDQLRVHVVPPFAPYYAPQAEVNNTIPVLCVARN 1066
            FNVF DGICHPKMALVIDDRLKVWDE+DQ RVHVVP FAPYYAPQAEVNN +PVLCVARN
Sbjct: 343  FNVFQDGICHPKMALVIDDRLKVWDERDQSRVHVVPAFAPYYAPQAEVNNAVPVLCVARN 402

Query: 1067 VACNVR 1084
            VACNVR
Sbjct: 403  VACNVR 408


>ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            1-like [Glycine max]
          Length = 954

 Score =  547 bits (1410), Expect = e-153
 Identities = 274/363 (75%), Positives = 307/363 (84%), Gaps = 2/363 (0%)
 Frame = +2

Query: 2    NHQKMNFKEIRISHFSKPSERCTPLSVLHTISNEGVSFKMESKGDLMLG--SLHSTLLTE 175
            N++  + KEIRISHFS+PSERC PL+VLHT+++ GV FKMESK     G   LHS  + E
Sbjct: 25   NYKNFHVKEIRISHFSQPSERCPPLAVLHTVTSCGVCFKMESKTQQQDGLFQLHSLCIRE 84

Query: 176  NKTAIMLLGEEELHLVAMSSRNNSEQNFYFWCFIVGNGRYASCLVMLNLRCLGIVFDLDE 355
            NKTA+M LG EE+HLVAM SRN       FW FIV  G Y SCLVMLNLRCLGIVFDLDE
Sbjct: 85   NKTAVMPLGGEEIHLVAMHSRNVDRP--CFWGFIVALGLYDSCLVMLNLRCLGIVFDLDE 142

Query: 356  TLIVANTMRSFEDRIDALQRKISTEIDRHRIDGMLTEIKRYNDDKAILKQYVENDQIVDD 535
            TLIVANTMRSFEDRIDALQRKI++E+D  RI GM  E+KRY DDK ILKQY ENDQ+VD+
Sbjct: 143  TLIVANTMRSFEDRIDALQRKINSEVDPQRISGMQAEVKRYQDDKNILKQYAENDQVVDN 202

Query: 536  GLIFKIQHEVVPALSDNYPAIIRPLIRLPEKNIILTRINPTVRDTSVLVRMRPAWEDLRN 715
            G + K+Q E+VPALSD++  I+RPLIRL +KNIILTRINP +RDTSVLVR+RPAWEDLR+
Sbjct: 203  GRVIKVQSEIVPALSDSHQPIVRPLIRLQDKNIILTRINPQIRDTSVLVRLRPAWEDLRS 262

Query: 716  YLTARGRKRFEVYVCTMAEKDYALEMWRLLDPGLNLINSTELLDRIVCVRAGSRKSLFNV 895
            YLTARGRKRFEVYVCTMAE+DYALEMWRLLDP  NLINS ELL RIVCV++G +KSLFNV
Sbjct: 263  YLTARGRKRFEVYVCTMAERDYALEMWRLLDPDSNLINSKELLGRIVCVKSGLKKSLFNV 322

Query: 896  FHDGICHPKMALVIDDRLKVWDEKDQLRVHVVPPFAPYYAPQAEVNNTIPVLCVARNVAC 1075
            F DG+CHPKMALVIDDRLKVWDEKDQ RVHVVP FAPYYAPQAE +NTIPVLCVARNVAC
Sbjct: 323  FQDGLCHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEASNTIPVLCVARNVAC 382

Query: 1076 NVR 1084
            NVR
Sbjct: 383  NVR 385