BLASTX nr result

ID: Coptis23_contig00013471 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013471
         (443 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324681.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
gb|ABK93172.1| unknown [Populus trichocarpa]                           64   1e-08
ref|XP_004167340.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma...    63   2e-08
ref|XP_004134063.1| PREDICTED: 60S ribosomal protein L7-4-like [...    63   2e-08
gb|ABB16984.1| thaliana 60S ribosomal protein L7 (At2g44120) [So...    63   2e-08

>ref|XP_002324681.1| predicted protein [Populus trichocarpa] gi|222866115|gb|EEF03246.1|
           predicted protein [Populus trichocarpa]
          Length = 288

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = -1

Query: 443 GIKKKRNHYVEGGDAGNREEFINELIRRMN 354
           G+KKKRNHYVEGGDAGNRE+FINELIRRMN
Sbjct: 259 GLKKKRNHYVEGGDAGNREDFINELIRRMN 288


>gb|ABK93172.1| unknown [Populus trichocarpa]
          Length = 244

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = -1

Query: 443 GIKKKRNHYVEGGDAGNREEFINELIRRMN 354
           G+KKKRNHYVEGGDAGNRE+FINELIRRMN
Sbjct: 215 GLKKKRNHYVEGGDAGNREDFINELIRRMN 244


>ref|XP_004167340.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L7-4-like
           [Cucumis sativus]
          Length = 246

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = -1

Query: 443 GIKKKRNHYVEGGDAGNREEFINELIRRMN 354
           G+KKKRNHYVEGGDAGNRE FINELIRRMN
Sbjct: 217 GLKKKRNHYVEGGDAGNRENFINELIRRMN 246


>ref|XP_004134063.1| PREDICTED: 60S ribosomal protein L7-4-like [Cucumis sativus]
          Length = 246

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = -1

Query: 443 GIKKKRNHYVEGGDAGNREEFINELIRRMN 354
           G+KKKRNHYVEGGDAGNRE FINELIRRMN
Sbjct: 217 GLKKKRNHYVEGGDAGNRENFINELIRRMN 246


>gb|ABB16984.1| thaliana 60S ribosomal protein L7 (At2g44120) [Solanum tuberosum]
          Length = 242

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = -1

Query: 443 GIKKKRNHYVEGGDAGNREEFINELIRRMN 354
           G+KKKRNHYVEGGDAGNRE FINELIRRMN
Sbjct: 213 GLKKKRNHYVEGGDAGNRENFINELIRRMN 242


Top