BLASTX nr result
ID: Coptis23_contig00013371
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00013371
(1025 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 270 5e-70
ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containi... 270 5e-70
ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi... 261 1e-67
ref|XP_002510931.1| pentatricopeptide repeat-containing protein,... 258 1e-66
ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containi... 257 3e-66
>ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 270 bits (689), Expect = 5e-70
Identities = 135/220 (61%), Positives = 163/220 (74%)
Frame = +1
Query: 364 ITYPKSPPTPLLIQSPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHIQ 543
+++PKS PTPLLI P Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE C+ +Q
Sbjct: 10 LSFPKSSPTPLLIH-PKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQ 68
Query: 544 SINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNSL 723
+I+HGI++H LIP N G +E AHQVFDEM R+ SAF WNSL
Sbjct: 69 AIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSL 128
Query: 724 ISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGF 903
ISGYAELG YEDALALYFQMEEEGVEPD FTFPRVLKAC G+GSI++GEAVHR +VR GF
Sbjct: 129 ISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGF 188
Query: 904 VLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
D FVLNALVDMY+KCG ARKVFD++ +D+VSW +
Sbjct: 189 AGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNS 228
Score = 90.5 bits (223), Expect = 6e-16
Identities = 53/180 (29%), Positives = 91/180 (50%)
Frame = +1
Query: 484 GIIIDTEIFSSLLETCFHIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETA 663
G+ D F +L+ C I SI G +H + + CG I A
Sbjct: 152 GVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRA 211
Query: 664 HQVFDEMYKRDLSAFPWNSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACA 843
+VFD++ +D+ + WNS+++GY G + +AL ++ QM +EG EPD +L +
Sbjct: 212 RKVFDQIEYKDIVS--WNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL---S 266
Query: 844 GLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
+ S++ +H ++R G + + N+L+ MYAKCG A+ +F +M +D+VSW +
Sbjct: 267 NISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNS 326
>ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 270 bits (689), Expect = 5e-70
Identities = 135/220 (61%), Positives = 163/220 (74%)
Frame = +1
Query: 364 ITYPKSPPTPLLIQSPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHIQ 543
+++PKS PTPLLI P Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE C+ +Q
Sbjct: 10 LSFPKSSPTPLLIH-PKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQ 68
Query: 544 SINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNSL 723
+I+HGI++H LIP N G +E AHQVFDEM R+ SAF WNSL
Sbjct: 69 AIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSL 128
Query: 724 ISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGF 903
ISGYAELG YEDALALYFQMEEEGVEPD FTFPRVLKAC G+GSI++GEAVHR +VR GF
Sbjct: 129 ISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGF 188
Query: 904 VLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
D FVLNALVDMY+KCG ARKVFD++ +D+VSW +
Sbjct: 189 AGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNS 228
Score = 90.5 bits (223), Expect = 6e-16
Identities = 53/180 (29%), Positives = 91/180 (50%)
Frame = +1
Query: 484 GIIIDTEIFSSLLETCFHIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETA 663
G+ D F +L+ C I SI G +H + + CG I A
Sbjct: 152 GVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRA 211
Query: 664 HQVFDEMYKRDLSAFPWNSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACA 843
+VFD++ +D+ + WNS+++GY G + +AL ++ QM +EG EPD +L +
Sbjct: 212 RKVFDQIEYKDIVS--WNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL---S 266
Query: 844 GLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
+ S++ +H ++R G + + N+L+ MYAKCG A+ +F +M +D+VSW +
Sbjct: 267 NISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNS 326
>ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product
[Vitis vinifera]
Length = 516
Score = 261 bits (668), Expect = 1e-67
Identities = 132/221 (59%), Positives = 161/221 (72%)
Frame = +1
Query: 361 SITYPKSPPTPLLIQSPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHI 540
++ +PKS PTPLLI + TK QAL+A+++D+Q SI GI +D +IFSSLLETCF +
Sbjct: 34 NLVFPKSSPTPLLINHKPRN-HTKLQALEALLRDLQASIQDGITVDAQIFSSLLETCFQL 92
Query: 541 QSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNS 720
Q+ +HGI++H LIP + G IE AH++FD+M +R+ SAF WNS
Sbjct: 93 QAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNS 152
Query: 721 LISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRG 900
LISGYAELG YEDA+ALYFQMEEEGV PD+FTFPRVLKAC G+GSI VGE VHR +VR G
Sbjct: 153 LISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCG 212
Query: 901 FVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
F DGFVLNALVDMYAKCG ARKVFD++ RD VSW +
Sbjct: 213 FADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRDSVSWNS 253
Score = 85.1 bits (209), Expect = 2e-14
Identities = 53/180 (29%), Positives = 91/180 (50%)
Frame = +1
Query: 484 GIIIDTEIFSSLLETCFHIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETA 663
G++ D F +L+ C I SI+ G ++H + CG I A
Sbjct: 177 GVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKA 236
Query: 664 HQVFDEMYKRDLSAFPWNSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACA 843
+VFD++ RD + WNS+++GY G AL+++ +M + G EPD V+
Sbjct: 237 RKVFDKIVCRD--SVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVV---T 291
Query: 844 GLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
G+ S+++ +H ++RRG + + N+L+ +Y+ G + A +FD M +RDVVSW +
Sbjct: 292 GVPSLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNS 351
>ref|XP_002510931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550046|gb|EEF51533.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 461
Score = 258 bits (660), Expect = 1e-66
Identities = 128/222 (57%), Positives = 161/222 (72%)
Frame = +1
Query: 358 NSITYPKSPPTPLLIQSPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFH 537
N +++P PTPLLI T QTK QALD +IKD+++SI +GI IDT+I SSLLETC+
Sbjct: 47 NGLSFPVPSPTPLLINLNTYT-QTKLQALDDVIKDLESSIGKGIKIDTQIISSLLETCYR 105
Query: 538 IQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWN 717
+ SI+HG+++H LIP + CG ++ AHQ+FDEM RD SAF WN
Sbjct: 106 LNSIDHGMRIHRLIPTSILRKNTGVSSKLLRLYASCGYMDEAHQMFDEMSNRDESAFAWN 165
Query: 718 SLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVRR 897
SLI+GY+ELG YEDA+ALYFQM+EE VEPD+FTFPRVLKAC GLG I+VGEAVHRD++R
Sbjct: 166 SLIAGYSELGLYEDAIALYFQMDEEYVEPDEFTFPRVLKACGGLGLIQVGEAVHRDLIRL 225
Query: 898 GFVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
GF D F NALVDMYAKCG AR +F++M+ +D VSW +
Sbjct: 226 GFANDRFASNALVDMYAKCGDIVKARSIFEKMASKDSVSWNS 267
Score = 76.3 bits (186), Expect = 1e-11
Identities = 43/127 (33%), Positives = 69/127 (54%)
Frame = +1
Query: 643 CGLIETAHQVFDEMYKRDLSAFPWNSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFP 822
CG I A +F++M +D + WNS+++GY G +A +M ++G+E D
Sbjct: 244 CGDIVKARSIFEKMASKD--SVSWNSMLTGYVRHGLIIEAFHTGRRMLQDGLELDSVAIS 301
Query: 823 RVLKACAGLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDR 1002
+L A + S ++G +H I+RRG D + N+L+ MY+ G R +FD M +R
Sbjct: 302 SLL---ANVSSFKLGVQIHGWILRRGMQWDLSIANSLIVMYSSNGKLVQTRWLFDNMQER 358
Query: 1003 DVVSWTA 1023
DVVSW +
Sbjct: 359 DVVSWNS 365
Score = 56.6 bits (135), Expect = 9e-06
Identities = 40/130 (30%), Positives = 59/130 (45%)
Frame = +1
Query: 484 GIIIDTEIFSSLLETCFHIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETA 663
G+ +D+ SSLL ++ S G+Q+H I G +
Sbjct: 292 GLELDSVAISSLLA---NVSSFKLGVQIHGWILRRGMQWDLSIANSLIVMYSSNGKLVQT 348
Query: 664 HQVFDEMYKRDLSAFPWNSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACA 843
+FD M +RD+ + WNS+IS + + LA + +ME G PD TF L ACA
Sbjct: 349 RWLFDNMQERDVVS--WNSIISAHC---KDPQVLAYFERMENSGAFPDNITFVSALSACA 403
Query: 844 GLGSIRVGEA 873
LG +R GE+
Sbjct: 404 HLGLVRDGES 413
>ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 257 bits (657), Expect = 3e-66
Identities = 124/223 (55%), Positives = 161/223 (72%), Gaps = 1/223 (0%)
Frame = +1
Query: 358 NSITYPKSPPTPLLIQS-PYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCF 534
N +++PK TPLLI P+ P+TK +AL+ ++KD++ S+ +GI ID EI++SLLETC+
Sbjct: 44 NGLSFPKPKSTPLLIHHRPH--PKTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCY 101
Query: 535 HIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPW 714
Q+I HGI++H LIP + CG ++ AH +FD+M KRD SAFPW
Sbjct: 102 RFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPW 161
Query: 715 NSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVR 894
NSLISGYA++G Y++A+ALYFQM EEGVE D FTFPRVLK CAG+GS++VGE VHR +R
Sbjct: 162 NSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIR 221
Query: 895 RGFVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVSWTA 1023
GF DGF+LNALVDMY+KCG ARKVFD+M RD VSW +
Sbjct: 222 AGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNS 264
Score = 86.3 bits (212), Expect = 1e-14
Identities = 56/183 (30%), Positives = 87/183 (47%)
Frame = +1
Query: 475 INRGIIIDTEIFSSLLETCFHIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLI 654
+ G+ D F +L+ C I S+ G ++H CG I
Sbjct: 185 VEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDI 244
Query: 655 ETAHQVFDEMYKRDLSAFPWNSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLK 834
A +VFD+M RD WNS+++ Y G A+ ++ QM EG EPD + VL
Sbjct: 245 VKARKVFDKMPHRD--PVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVL- 301
Query: 835 ACAGLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGVAEDARKVFDRMSDRDVVS 1014
G+ S+ +G +H ++ +G + + N+L+ MY+ G E AR VF+ M +RDVVS
Sbjct: 302 --TGVSSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVS 359
Query: 1015 WTA 1023
W +
Sbjct: 360 WNS 362
Score = 60.5 bits (145), Expect = 7e-07
Identities = 37/111 (33%), Positives = 57/111 (51%)
Frame = +1
Query: 538 IQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWN 717
+ S+ G+Q+H + G +E A VF+ M +RD+ + WN
Sbjct: 304 VSSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVS--WN 361
Query: 718 SLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGE 870
S+IS + + +ALA + QME GV+PD+ TF +L ACA LG ++ GE
Sbjct: 362 SIISAHC---KRREALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGE 409