BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013351
         (924 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [V...   416   e-114
ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago t...   402   e-110
gb|AFK37792.1| unknown [Lotus japonicus]                              400   e-109
ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-li...   399   e-109
ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-li...   394   e-107

>ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
           gi|147834996|emb|CAN61380.1| hypothetical protein
           VITISV_037546 [Vitis vinifera]
           gi|297746275|emb|CBI16331.3| unnamed protein product
           [Vitis vinifera]
          Length = 254

 Score =  416 bits (1070), Expect = e-114
 Identities = 211/258 (81%), Positives = 231/258 (89%), Gaps = 4/258 (1%)
 Frame = +1

Query: 40  MAGKS----STYSPSPTLKKQHHLKKPLFKDLVDWVRPDTRAFHQCRPAFLRTGAVNAAS 207
           MAGKS    STYSPSP  K     K+P+F+D VDWVRPD R FHQCRPAFL+TGAVNAAS
Sbjct: 1   MAGKSAATPSTYSPSPAPKT----KRPIFQD-VDWVRPDGRGFHQCRPAFLKTGAVNAAS 55

Query: 208 GSAYVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSM 387
           GSAY EFG+TKVIVSVFGPRESKKAM YS  GRLNCNVSYTTFA  IRGQGSDHK YSSM
Sbjct: 56  GSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLNCNVSYTTFAMPIRGQGSDHKGYSSM 115

Query: 388 LHKALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSV 567
           LHKALEGA+++ESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV SVSV
Sbjct: 116 LHKALEGAIIVESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSV 175

Query: 568 SCLGKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACV 747
           SCLGKNLV+DPI EEESYQDGSL+IT MPSRNEVTQLT+ GEWSTP++HEAMQ+CL+AC 
Sbjct: 176 SCLGKNLVIDPILEEESYQDGSLLITCMPSRNEVTQLTVNGEWSTPRVHEAMQICLEACS 235

Query: 748 KLGEIMRSCLRESASAPE 801
           KL +I+RSCL+E+ASAP+
Sbjct: 236 KLAKIIRSCLKETASAPK 253


>ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
           gi|355507420|gb|AES88562.1| Exosome complex exonuclease
           MTR3 [Medicago truncatula]
          Length = 258

 Score =  402 bits (1032), Expect = e-110
 Identities = 206/255 (80%), Positives = 222/255 (87%), Gaps = 4/255 (1%)
 Frame = +1

Query: 40  MAGKS----STYSPSPTLKKQHHLKKPLFKDLVDWVRPDTRAFHQCRPAFLRTGAVNAAS 207
           MAGKS    +TYSPS T  K    KKPL     DW RPD R FHQCRPAF RTGAVNAAS
Sbjct: 1   MAGKSGTTPATYSPSLTTGK----KKPLLLKEEDWTRPDGRGFHQCRPAFFRTGAVNAAS 56

Query: 208 GSAYVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSM 387
           GSAY EFG+TKVIVSVFGPRESKKAM+YSD GRLNCNVSYTTF+T +RGQGSDHKEYSSM
Sbjct: 57  GSAYAEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSSM 116

Query: 388 LHKALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSV 567
           LHKALEGA++L+SFPKTTVDVFALVLES GSDLPVVIS ASLALADAGI+MYDLV SVSV
Sbjct: 117 LHKALEGAIILDSFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVASVSV 176

Query: 568 SCLGKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACV 747
           SCLGKNLV+DPI EEE+ QDGSLMIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC 
Sbjct: 177 SCLGKNLVIDPIFEEENSQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACA 236

Query: 748 KLGEIMRSCLRESAS 792
           KL +IMRSCL+ESAS
Sbjct: 237 KLAKIMRSCLKESAS 251


>gb|AFK37792.1| unknown [Lotus japonicus]
          Length = 253

 Score =  400 bits (1029), Expect = e-109
 Identities = 202/258 (78%), Positives = 227/258 (87%), Gaps = 4/258 (1%)
 Frame = +1

Query: 40  MAGKS----STYSPSPTLKKQHHLKKPLFKDLVDWVRPDTRAFHQCRPAFLRTGAVNAAS 207
           MAGK+    +TYSPSPT  K+   K  L K+  DWVRPD R FHQCRPAF RTGAVNAAS
Sbjct: 1   MAGKAGATPATYSPSPTTDKK---KTSLIKE--DWVRPDGRGFHQCRPAFFRTGAVNAAS 55

Query: 208 GSAYVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSM 387
           GSAY EFG+TKVIVSVFGPRESKKAMLYSD+GRLNCNVSYTTFAT +RGQGSDHK+YS+M
Sbjct: 56  GSAYAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAM 115

Query: 388 LHKALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSV 567
           L KAL GA++LESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV SVSV
Sbjct: 116 LDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSV 175

Query: 568 SCLGKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACV 747
           SCL KNLV+DPI+EEE+ QDGS+MIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC 
Sbjct: 176 SCLSKNLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACA 235

Query: 748 KLGEIMRSCLRESASAPE 801
           KL ++MRSCL+E++ + +
Sbjct: 236 KLAKVMRSCLKEASDSQD 253


>ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
          Length = 255

 Score =  399 bits (1025), Expect = e-109
 Identities = 203/259 (78%), Positives = 224/259 (86%), Gaps = 4/259 (1%)
 Frame = +1

Query: 40  MAGKS----STYSPSPTLKKQHHLKKPLFKDLVDWVRPDTRAFHQCRPAFLRTGAVNAAS 207
           MAGK     +TYSPSPT  ++   K P+FK+  DWVRPD R FHQCRPAF RTGAVNAAS
Sbjct: 1   MAGKGGATPATYSPSPTTNRKK--KPPIFKE--DWVRPDGRGFHQCRPAFFRTGAVNAAS 56

Query: 208 GSAYVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSM 387
           GSAY EFG+TKVIVSVFGPRESKKAM+YSDIGRLNCNVS+TTFAT IRGQGSDHKEY +M
Sbjct: 57  GSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYCAM 116

Query: 388 LHKALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSV 567
           LHKALEGA++LE+FPKTTVDVFALVLES GSDLPVVISCASLALADAGIMMYD+V SVSV
Sbjct: 117 LHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDIVASVSV 176

Query: 568 SCLGKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACV 747
           SC  KNLV+DPI EEE  QDGSLMIT MPSR E+TQLT+TGEWST KI+E MQLCLDAC 
Sbjct: 177 SCFNKNLVIDPILEEEIGQDGSLMITCMPSRYEITQLTVTGEWSTTKINEGMQLCLDACA 236

Query: 748 KLGEIMRSCLRESASAPEQ 804
           KL +IMRSCL+E AS  ++
Sbjct: 237 KLAKIMRSCLKEVASDSQE 255


>ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
          Length = 254

 Score =  394 bits (1012), Expect = e-107
 Identities = 202/259 (77%), Positives = 223/259 (86%), Gaps = 4/259 (1%)
 Frame = +1

Query: 40  MAGKS----STYSPSPTLKKQHHLKKPLFKDLVDWVRPDTRAFHQCRPAFLRTGAVNAAS 207
           MAGK     +TYSPSPT  K+   K  LF +  D  RPD R+FHQCRPAF RTGAVNAAS
Sbjct: 1   MAGKGGSTPATYSPSPTTDKK---KPSLFNE--DLARPDGRSFHQCRPAFFRTGAVNAAS 55

Query: 208 GSAYVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSM 387
           GSAY E G+TKVIVSVFGPRESKKAM+YSDIGRLNCNVS+TTFAT IRGQGSDHKEYSSM
Sbjct: 56  GSAYAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYSSM 115

Query: 388 LHKALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSV 567
           LHKALEGA++LE+FPKTTVDVFALVLES GSDLPVVISCASLALADAGIMMYDLV SVSV
Sbjct: 116 LHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSV 175

Query: 568 SCLGKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACV 747
           SC  KNLV+DP+ EEE+ QDGSLMIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC 
Sbjct: 176 SCFNKNLVIDPVLEEENGQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACA 235

Query: 748 KLGEIMRSCLRESASAPEQ 804
           KL +IMRSCL+E+ S  ++
Sbjct: 236 KLAKIMRSCLKEAVSDSQE 254