BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013248
         (531 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containi...   105   3e-21
ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containi...   105   3e-21
ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|2...    93   2e-17
ref|XP_002532046.1| pentatricopeptide repeat-containing protein,...    88   7e-16

>ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
           gi|296082481|emb|CBI21486.3| unnamed protein product
           [Vitis vinifera]
          Length = 489

 Score =  115 bits (287), Expect = 5e-24
 Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
 Frame = +1

Query: 229 LQLNTVTPFSINFKDPTISNFKPTQFHLQDSPFTRI-SCISTRPKRKAGVKIDKSETEEL 405
           LQL + +  S  F  P+   +KPT+ HL   P T + SC+STRP+RK G K DKSE EEL
Sbjct: 12  LQLYSSSTLSPTFTLPSSRFYKPTRLHLPPRPSTTVVSCVSTRPRRKPGPKPDKSEVEEL 71

Query: 406 VKTLLRNFNDKKPLVNVLDKYVKFIRTEHCFHLFEELGKRDK 531
           V+ L++NF  ++PL++ L+KYVK IRTEHCF LFEELGK DK
Sbjct: 72  VRVLMKNFGGERPLISTLNKYVKVIRTEHCFRLFEELGKTDK 113


>ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  105 bits (263), Expect = 3e-21
 Identities = 49/79 (62%), Positives = 62/79 (78%)
 Frame = +1

Query: 295 PTQFHLQDSPFTRISCISTRPKRKAGVKIDKSETEELVKTLLRNFNDKKPLVNVLDKYVK 474
           P    ++ +  TR+ CISTRP RK GVK D+SE EELV+ ++RNF+DK+PL+  LDKYV+
Sbjct: 28  PLPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYVR 87

Query: 475 FIRTEHCFHLFEELGKRDK 531
            +RTEHCF LFEELGKRDK
Sbjct: 88  VMRTEHCFLLFEELGKRDK 106


>ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  105 bits (263), Expect = 3e-21
 Identities = 49/79 (62%), Positives = 62/79 (78%)
 Frame = +1

Query: 295 PTQFHLQDSPFTRISCISTRPKRKAGVKIDKSETEELVKTLLRNFNDKKPLVNVLDKYVK 474
           P    ++ +  TR+ CISTRP RK GVK D+SE EELV+ ++RNF+DK+PL+  LDKYV+
Sbjct: 28  PLPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYVR 87

Query: 475 FIRTEHCFHLFEELGKRDK 531
            +RTEHCF LFEELGKRDK
Sbjct: 88  VMRTEHCFLLFEELGKRDK 106


>ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|222855789|gb|EEE93336.1|
           predicted protein [Populus trichocarpa]
          Length = 416

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 42/68 (61%), Positives = 56/68 (82%)
 Frame = +1

Query: 328 TRISCISTRPKRKAGVKIDKSETEELVKTLLRNFNDKKPLVNVLDKYVKFIRTEHCFHLF 507
           T++SC+STRPK++     +KSE +ELV+ L+R+F+DK+PLV  L+KYVK +RTEHCF LF
Sbjct: 1   TQVSCVSTRPKKRPVPTDEKSEAQELVRVLVRSFSDKQPLVKTLNKYVKVMRTEHCFMLF 60

Query: 508 EELGKRDK 531
           EELGK DK
Sbjct: 61  EELGKTDK 68


>ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528289|gb|EEF30336.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 478

 Score = 88.2 bits (217), Expect = 7e-16
 Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
 Frame = +1

Query: 229 LQLNTVTPFSINFKDPTISNFKPTQFHLQDSPFTRISCISTRPKRKAGVKIDKSETEELV 408
           LQL+ +   +     P I N   +    ++   T I+C+STRP++K     ++SETE+LV
Sbjct: 10  LQLSPLGSSNFTNNFPQIHNPTLSWHPCKNLRQTHITCVSTRPRKKRFPISEESETEDLV 69

Query: 409 KTLLRNFN-DKKPLVNVLDKYVKFIRTEHCFHLFEELGKRDK 531
           + +LR+F+ DK PLV  LDKYV+ +RTEHCF LFEELG+RDK
Sbjct: 70  RYVLRSFSSDKVPLVRTLDKYVRVVRTEHCFLLFEELGRRDK 111