BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013236
         (1962 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containi...   756   0.0  
ref|XP_002526491.1| pentatricopeptide repeat-containing protein,...   702   0.0  
ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   696   0.0  
ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [...   690   0.0  
ref|XP_002326842.1| predicted protein [Populus trichocarpa] gi|2...   686   0.0  

>ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like
            [Vitis vinifera]
          Length = 889

 Score =  756 bits (1952), Expect = 0.0
 Identities = 370/594 (62%), Positives = 465/594 (78%)
 Frame = +1

Query: 1    RRGNVRVAESVLHVMSKFQREPDAFSYNIMINAYCICGRFSKALSWVELMIKSGCSPNSV 180
            R+G + + ES+LH+M KF  EP+AF+YNI+INA CI GR S AL+W  LMI+ GC+P  V
Sbjct: 278  RKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVV 337

Query: 181  TFSTIINALCKEGNVVTAKKLFYDIQDVGIGPNTVMYNTLIDGFVKAKEISQANCLYEEM 360
            TF+T+INA CKEGNVV A+KLF  ++++G  PN +MYNTL++G+VK +EI QAN LYEEM
Sbjct: 338  TFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEM 397

Query: 361  REKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISVLGFLSHLSVSDLSIAGLCWVGXX 540
            R+KG+ PD +TFN L  GH KYGREEDG+RLL+DISVLG L   S+ D+S++GLCW G  
Sbjct: 398  RKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRL 457

Query: 541  XXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDKAFDVYRVMLEFGLIPSSSTCSSL 720
                    DMLEKGL PS+IAFNS+IA YS+A LEDKAF+ Y++M+ FGL PS STCSSL
Sbjct: 458  DEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSL 517

Query: 721  LMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLDGYFRTGDVTGARVLWYEMEKRAV 900
            LMGL   G L EA EL+ +M++KG  +N +AFTVLLD +F+ GDV GA+ LW EME+R +
Sbjct: 518  LMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGI 577

Query: 901  SPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDALK 1080
             PD +A+SA I+GLSK GL++EA N+F EMLR+G +PNNF YNSLI G+C CG+L++ALK
Sbjct: 578  FPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALK 637

Query: 1081 LEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGYC 1260
            LEK+MR RGLLPDIFT NMII G CK+G+M+ A +V MDM ++GL+PDI+TYNTLI+GYC
Sbjct: 638  LEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYC 697

Query: 1261 KVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTV 1440
            K  D+++A++ V RM A+G +PD+TTYNIRI GFCS+R++  AV MLDELV  GIVPNTV
Sbjct: 698  KAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTV 757

Query: 1441 TYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQ 1620
            TYN+M+NGVC DI   LDRAMILTA+LLKMAFVPNVVT N LLS + KQGMP + L W  
Sbjct: 758  TYNSMLNGVCSDI---LDRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMPERTLMWGH 814

Query: 1621 KLREVSFPFDDITCKILDRANSDTCRVAEDSTETSGKGLFLDFLMYITYDYLCR 1782
            KL E+ + FD+IT KI+D+A+      A+ S  TS K LFLDFLMYITYDY CR
Sbjct: 815  KLSEIPYAFDEITYKIMDKAH-HILEDADFSRVTSAKSLFLDFLMYITYDYFCR 867



 Score =  149 bits (375), Expect = 3e-33
 Identities = 113/479 (23%), Positives = 212/479 (44%), Gaps = 33/479 (6%)
 Frame = +1

Query: 292  NTLIDGFVKAKEISQANCLYEEMREKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISV 471
            ++L+  FV A+   QA  +   MRE GV P A     LF            + LLR    
Sbjct: 200  DSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILF------------KLLLR---- 243

Query: 472  LGFLSHLSVSDLSIAGLCWVGXXXXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDK 651
                               VG          D++ +G  P    F+ II G+ +      
Sbjct: 244  -------------------VGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHL 284

Query: 652  AFDVYRVMLEFGLIPSSSTCSSLLMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLD 831
               +  +M +F   P++   + ++   C  G  ++A    + M+++G     V F  +++
Sbjct: 285  GESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVIN 344

Query: 832  GYFRTGDVTGARVLWYEMEKRAVSPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVP 1011
             + + G+V  AR L+  +++   SP+AI Y+ L+NG  K+  +D+A  ++EEM ++G  P
Sbjct: 345  AFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAP 404

Query: 1012 NNFTYNSLIGGYCHCGRLSDALKLEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVL 1191
            +  T+N L+ G+   GR  D  +L K +   GLLPD    ++ + G C  G++  A + L
Sbjct: 405  DGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFL 464

Query: 1192 MDMLRSGLNPDIVTYNTLISGYCKVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCST 1371
            MDML  GL+P I+ +N++I+ Y +      A +    M   G  P  +T +  + G    
Sbjct: 465  MDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSIN 524

Query: 1372 RKIKIAVKMLDELVMLGIVPNTVTYNTMMN---------------------GVCRDITY- 1485
             +++ A +++ +++  G+  N + +  +++                     G+  D+   
Sbjct: 525  GRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAF 584

Query: 1486 -----------MLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQKLR 1629
                       +++ A  +  ++L+   +PN    NSL+  +CK G   +AL  E+ +R
Sbjct: 585  SAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMR 643



 Score =  136 bits (343), Expect = 2e-29
 Identities = 90/343 (26%), Positives = 160/343 (46%)
 Frame = +1

Query: 703  STCSSLLMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLDGYFRTGDVTGARVLWYE 882
            S   SL+       M  +A E++ +M + G   +     +L     R GD      L+ +
Sbjct: 197  SVLDSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKD 256

Query: 883  MEKRAVSPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGR 1062
            + +R   P    +S +I G  + G +    ++   M +    PN F YN +I   C  GR
Sbjct: 257  VIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGR 316

Query: 1063 LSDALKLEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNT 1242
             SDAL    +M +RG  P + T N +I+ FCKEG +  A  +   +   G +P+ + YNT
Sbjct: 317  TSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNT 376

Query: 1243 LISGYCKVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLG 1422
            L++GY K+ ++  A      M   G  PD  T+NI + G     + +   ++L ++ +LG
Sbjct: 377  LMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLG 436

Query: 1423 IVPNTVTYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGK 1602
            ++P+   ++  ++G+C      LD AM     +L+    P+++  NS+++ Y + G+  K
Sbjct: 437  LLPDRSLFDISVSGLC--WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDK 494

Query: 1603 ALAWEQKLREVSFPFDDITCKILDRANSDTCRVAEDSTETSGK 1731
            A    + +          TC  L    S   R+ +++TE  G+
Sbjct: 495  AFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRL-QEATELIGQ 536


>ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223534166|gb|EEF35882.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 884

 Score =  702 bits (1813), Expect = 0.0
 Identities = 340/545 (62%), Positives = 420/545 (77%)
 Frame = +1

Query: 1    RRGNVRVAESVLHVMSKFQREPDAFSYNIMINAYCICGRFSKALSWVELMIKSGCSPNSV 180
            ++G +RVAES+L VM KF  EPD ++YNI+INAY I GR S AL ++ LMIK+GC P+ +
Sbjct: 290  QKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLI 349

Query: 181  TFSTIINALCKEGNVVTAKKLFYDIQDVGIGPNTVMYNTLIDGFVKAKEISQANCLYEEM 360
            TFSTII A C EGNVV A+K+F  IQ+VG+ PN  MYNTL+ G+ KA+++ QAN LYEEM
Sbjct: 350  TFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEM 409

Query: 361  REKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISVLGFLSHLSVSDLSIAGLCWVGXX 540
            R+KG+ PD  TFN L  G+ KYG+E D   L RD S+   +   S+ D+S+AGLCW G  
Sbjct: 410  RDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQL 469

Query: 541  XXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDKAFDVYRVMLEFGLIPSSSTCSSL 720
                    DMLEKG+ PSV+AFNS+IA YS+A  ED A   Y++ML FGL+PSSSTCSS+
Sbjct: 470  DEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSM 529

Query: 721  LMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLDGYFRTGDVTGARVLWYEMEKRAV 900
            L+GL + G L EA +L+ KM+ KG P+N+VAFTVLLDGYF+ GD  GA  LWYEME R +
Sbjct: 530  LLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGI 589

Query: 901  SPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDALK 1080
             PDAIA+SA I+GLSK GL++EA   F EM ++G+VPNNF YNSLI G C+CG+L +ALK
Sbjct: 590  CPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALK 649

Query: 1081 LEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGYC 1260
            LE+ MRQ+GLLPDIFT N+II+GFCKEG+MK A D   +M   G+ PD VTYNTLI GYC
Sbjct: 650  LEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYC 709

Query: 1261 KVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTV 1440
            KV D++SA++F+ +M A+GWDPDITTYNIRIQGFCS++KI  AV MLDEL+ +G+VPNTV
Sbjct: 710  KVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTV 769

Query: 1441 TYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQ 1620
            TYNTMMN VC D   MLDRAM+LTAKLLKMAFVPNVVT N LLSH+CKQGMP KAL W Q
Sbjct: 770  TYNTMMNAVCTD---MLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKALIWGQ 826

Query: 1621 KLREV 1635
            KL ++
Sbjct: 827  KLNKL 831



 Score =  117 bits (293), Expect = 1e-23
 Identities = 109/495 (22%), Positives = 203/495 (41%), Gaps = 35/495 (7%)
 Frame = +1

Query: 292  NTLIDGFVKAKEISQANCLYEEMREKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISV 471
            NTL+ GF+ ++   ++  +   MRE GV P +   + LF             RLL     
Sbjct: 212  NTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILF-------------RLL----- 253

Query: 472  LGFLSHLSVSDLSIAGLCWVGXXXXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDK 651
                  L V D    G  W             M+  G  P    FN +I  + +      
Sbjct: 254  ------LRVGDY---GSVW--------KLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRV 296

Query: 652  AFDVYRVMLEFGLIPSSSTCSSLLMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLD 831
            A  +  VM +F   P     + L+      G  ++A   +  M++ G   + + F+ ++ 
Sbjct: 297  AESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIIT 356

Query: 832  GYFRTGDVTGARVLWYEMEKRAVSPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVP 1011
             +   G+V  AR ++  +++  +SP+   Y+ L++G  K   + +A  ++EEM  +G  P
Sbjct: 357  AFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAP 416

Query: 1012 NNFTYNSLIGGYCHCGRLSDALKLEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVL 1191
            +  T+N L+ G    G+ +D+ +L +      L+PD    ++ + G C  G++  A   L
Sbjct: 417  DGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFL 476

Query: 1192 MDMLRSGLNPDIVTYNTLISGY-----------------------------------CKV 1266
             DML  G+ P +V +N++I+ Y                                    K 
Sbjct: 477  EDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKK 536

Query: 1267 SDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTVTY 1446
              L  A D + +M   G   +   + + + G+        A  +  E+   GI P+ + +
Sbjct: 537  GRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAF 596

Query: 1447 NTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQKL 1626
            +  ++G+ +    +++ A    +++ K  FVPN    NSL+   C  G   +AL  E+++
Sbjct: 597  SAFIDGLSK--AGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREM 654

Query: 1627 REVSFPFDDITCKIL 1671
            R+     D  T  I+
Sbjct: 655  RQKGLLPDIFTTNII 669


>ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At1g19290-like [Cucumis
            sativus]
          Length = 885

 Score =  696 bits (1796), Expect = 0.0
 Identities = 344/594 (57%), Positives = 438/594 (73%)
 Frame = +1

Query: 1    RRGNVRVAESVLHVMSKFQREPDAFSYNIMINAYCICGRFSKALSWVELMIKSGCSPNSV 180
            R+G  R+ E++LHVM KF+ EPD +SYNI+INA C+ G+ S AL  + LMI++GC P+  
Sbjct: 269  RKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIA 328

Query: 181  TFSTIINALCKEGNVVTAKKLFYDIQDVGIGPNTVMYNTLIDGFVKAKEISQANCLYEEM 360
            TF TII+A CKEGNV  A+K F +I+D+G+  NT++YN +I G+VKA++ISQAN L+EEM
Sbjct: 329  TFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEM 388

Query: 361  REKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISVLGFLSHLSVSDLSIAGLCWVGXX 540
            R K + PD +TFNTL  GH +YG+EEDG RLLRD+SV G L   S+ D+++AGLCW G  
Sbjct: 389  RTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRY 448

Query: 541  XXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDKAFDVYRVMLEFGLIPSSSTCSSL 720
                    ++LEKG+ PSV+AFNSIIA Y  A LE++AF  Y +M++FGL PSSSTCSSL
Sbjct: 449  DEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSL 508

Query: 721  LMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLDGYFRTGDVTGARVLWYEMEKRAV 900
            L+ L R G L EA   +  M+ KGFP+  +AFTVLLDGYFR G V  A  LW EM+ R V
Sbjct: 509  LISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGV 568

Query: 901  SPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDALK 1080
             PDA+A++A INGL   GLM +A ++F +MLR+G+VPNNF YNSLIGG+C  G+L++ALK
Sbjct: 569  FPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALK 628

Query: 1081 LEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGYC 1260
            L + M +RGLLPDIFT+NMII G CK+G+MK A +  MDM R GL+PDIVTYNTLI GYC
Sbjct: 629  LVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYC 688

Query: 1261 KVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTV 1440
            K  D+  A+D + +M  +GW+PD+TTYNIRI G+C+ RKI  AV +L+EL+ +GIVPNTV
Sbjct: 689  KAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTV 748

Query: 1441 TYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQ 1620
            TYNTM+N VC  I   LD AMILTAKLLKMAFVPN VTVN LLS +CKQGMP KA+ W Q
Sbjct: 749  TYNTMINAVCNVI---LDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWGQ 805

Query: 1621 KLREVSFPFDDITCKILDRANSDTCRVAEDSTETSGKGLFLDFLMYITYDYLCR 1782
            KL E+   FD+ T K+++RA             +  K +F+DFLMYITYDY CR
Sbjct: 806  KLSEIHLDFDETTHKLMNRAYRALEEGGVVINTSYEKSVFMDFLMYITYDYFCR 859



 Score = 92.0 bits (227), Expect = 5e-16
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 2/235 (0%)
 Frame = +1

Query: 892  RAVSPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSD 1071
            R    D      L+    K  +  EA  I  +M   G  PN    + L       G    
Sbjct: 181  RVYESDFSVLDTLMQAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA 240

Query: 1072 ALKLEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLIS 1251
              KL   + ++G  P+ FT N++I  FC++G  +    +L  M +    PD+ +YN +I+
Sbjct: 241  VWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIN 300

Query: 1252 GYCKVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVP 1431
              C       A   +  M  NG  P I T+   I  FC    +++A K  DE+  +G+  
Sbjct: 301  ANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQ 360

Query: 1432 NTVTYNTMMNGV--CRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQG 1590
            NT+ YN M++G    RDI+    +A +L  ++     VP+ +T N+L++ + + G
Sbjct: 361  NTIVYNIMISGYVKARDIS----QANLLFEEMRTKDIVPDGITFNTLVAGHYRYG 411


>ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  690 bits (1781), Expect = 0.0
 Identities = 342/598 (57%), Positives = 442/598 (73%), Gaps = 3/598 (0%)
 Frame = +1

Query: 1    RRGNVRVAESVLHVMSKFQREPDAFSYNIMINAYCICGRFSKALSWVELMIKSGCSPNSV 180
            R+  V V ES+LH+M KF   PD  ++NI+INA CI GR   A+ W+ LM++SG  P+  
Sbjct: 259  RQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVA 318

Query: 181  TFSTIINALCKEGNVVTAKKLFYDIQDVGIGPNTVMYNTLIDGFVKAKEISQANCLYEEM 360
            TF+TI++ALC+EGNVV A+KLF  IQD+GI PN  +YNTL+DG+ KA+E++QA+ LYEEM
Sbjct: 319  TFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEM 378

Query: 361  REKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISVLGFLSHLSVSDLSIAGLCWVGXX 540
            R  GV+PD VTFN L +GH KYGR ED +RLL+D+ V G     S+ D+ ++ LCW G  
Sbjct: 379  RTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRL 438

Query: 541  XXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDKAFDVYRVMLEFGLIPSSSTCSSL 720
                    ++LEKGL  SV+AFNS+I  YS+A LEDKAF+ YR+M+  G  PSSSTC+SL
Sbjct: 439  DEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSL 498

Query: 721  LMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLDGYFRTGDVTGARVLWYEMEKRAV 900
            LMGLCR G L EA  L+ +ML+KGFPIN+VA+TVLLDGYF+  ++ GA+ LW EM++R +
Sbjct: 499  LMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGI 558

Query: 901  SPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDALK 1080
             PDA+A++ALI+GLSK G ++EA  +F EM   G+VPNNF YNSLI G C CGR+++ALK
Sbjct: 559  YPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALK 618

Query: 1081 LEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGYC 1260
            LEK MRQ+GLL D FT N+IIDGFC+ G+MK A +  +DM R GL PDI T+N LI GYC
Sbjct: 619  LEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYC 678

Query: 1261 KVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTV 1440
            K  D++ A + V +M + G DPDITTYN  + G+C  RK+  AV +LD+L+  GIVP+TV
Sbjct: 679  KAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTV 738

Query: 1441 TYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQ 1620
            TYNTM++G+C DI   LDRAMILTAKLLKM F+PNV+T N LLSH+CKQGMP KAL W Q
Sbjct: 739  TYNTMLSGICSDI---LDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKALIWGQ 795

Query: 1621 KLREVSFPFDDITCKILDRANSDTCRVAEDSTETSG---KGLFLDFLMYITYDYLCRD 1785
            KLRE+SF FD+I+ +ILD+A    C + +D     G   K LF+DFLMYIT+DY  R+
Sbjct: 796  KLREISFGFDEISYRILDQA---YCLMQDDVELVRGTYEKHLFMDFLMYITFDYFSRN 850



 Score =  140 bits (352), Expect = 2e-30
 Identities = 90/355 (25%), Positives = 175/355 (49%)
 Frame = +1

Query: 607  NSIIAGYSKACLEDKAFDVYRVMLEFGLIPSSSTCSSLLMGLCRIGMLTEAEELMDKMLQ 786
            N+++ G+    +  +A +V R+M   G+ P  S+ + LL  L RIG      +L   M+ 
Sbjct: 181  NTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIF 240

Query: 787  KGFPINRVAFTVLLDGYFRTGDVTGARVLWYEMEKRAVSPDAIAYSALINGLSKVGLMDE 966
            KG   + + F  ++ G+ R   V     L + M K   SPD + ++ LIN     G    
Sbjct: 241  KGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWV 300

Query: 967  ACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDALKLEKMMRQRGLLPDIFTLNMIID 1146
            A +    M+R G  P+  T+ +++   C  G + +A KL   ++  G+ P+    N ++D
Sbjct: 301  AIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMD 360

Query: 1147 GFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGYCKVSDLISAEDFVTRMCANGWDP 1326
            G+ K  ++ +A+ +  +M  +G++PD VT+N L+ G+ K   +  ++  +  +  +G   
Sbjct: 361  GYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFL 420

Query: 1327 DITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTVTYNTMMNGVCRDITYMLDRAMI 1506
            D + Y++ +   C   ++  A+K+L EL+  G+  + V +N+++    R    + D+A  
Sbjct: 421  DSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSR--AGLEDKAFE 478

Query: 1507 LTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQKLREVSFPFDDITCKIL 1671
                +++  F P+  T NSLL   C++G   +A     ++ E  FP + +   +L
Sbjct: 479  AYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVL 533



 Score = 87.8 bits (216), Expect = 1e-14
 Identities = 62/228 (27%), Positives = 102/228 (44%)
 Frame = +1

Query: 907  DAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDALKLE 1086
            D    + L+ G   VG+  EA  +   M   G  P   +   L+      G      KL 
Sbjct: 176  DFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLF 235

Query: 1087 KMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGYCKV 1266
            K M  +G  P   T N +I GFC++ ++     +L  M +   +PD+VT+N LI+  C  
Sbjct: 236  KDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIG 295

Query: 1267 SDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTVTY 1446
                 A D++  M  +G +P + T+   +   C    +  A K+ D +  +GI PN   Y
Sbjct: 296  GRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIY 355

Query: 1447 NTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQG 1590
            NT+M+G  +     + +A +L  ++      P+ VT N L+  + K G
Sbjct: 356  NTLMDGYFK--AREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYG 401


>ref|XP_002326842.1| predicted protein [Populus trichocarpa] gi|222835157|gb|EEE73592.1|
            predicted protein [Populus trichocarpa]
          Length = 726

 Score =  686 bits (1771), Expect = 0.0
 Identities = 329/560 (58%), Positives = 429/560 (76%)
 Frame = +1

Query: 1    RRGNVRVAESVLHVMSKFQREPDAFSYNIMINAYCICGRFSKALSWVELMIKSGCSPNSV 180
            R+G+V+V ES+L VM KF+ +PD ++YNI+INAYC  G+   AL W+  MI +GC+P+ V
Sbjct: 161  RKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLV 220

Query: 181  TFSTIINALCKEGNVVTAKKLFYDIQDVGIGPNTVMYNTLIDGFVKAKEISQANCLYEEM 360
            TF T+INA C +GN++ A+ LF  +++ G  PN V YNTL++G+VKA++I QAN LYEEM
Sbjct: 221  TFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEM 280

Query: 361  REKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISVLGFLSHLSVSDLSIAGLCWVGXX 540
            + K V PD  TFN L  GH +YGREED +RLLRD+S  G LS  S+ ++ ++GLCW G  
Sbjct: 281  KSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWL 340

Query: 541  XXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDKAFDVYRVMLEFGLIPSSSTCSSL 720
                    DMLEKG+ P+V+AFNSIIA YS+A LE+KA+  YR+M++FGL PSS TCSSL
Sbjct: 341  DEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSL 400

Query: 721  LMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLDGYFRTGDVTGARVLWYEMEKRAV 900
            +MGL ++  L EA +L+ +M+ +G PIN+ AFT+LLDGYFR GDV GA  LW EME R +
Sbjct: 401  IMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGI 460

Query: 901  SPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDALK 1080
             PDA+A+SA INGLS VGL+DEA ++F +M ++G++PNNF YNSLI G+C+ GRL +AL 
Sbjct: 461  HPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALM 520

Query: 1081 LEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGYC 1260
            LE+ M ++GLLPDIFT N+II+G CKEG+MK A+DV  +M  +GL PDIVTYNTLI GYC
Sbjct: 521  LEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYC 580

Query: 1261 KVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNTV 1440
            K  D +S ++ V +M A GWDPDITTYNIR+ G C+ RK+  AV ML+EL+  G+VP+TV
Sbjct: 581  KAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTV 640

Query: 1441 TYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWEQ 1620
            TYNT+MNGVC D+   L+RAMI+TAKLLKMAFVPNVVT N LLSH+CKQGMP K + W Q
Sbjct: 641  TYNTVMNGVCTDV---LERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQGMPEKTIMWGQ 697

Query: 1621 KLREVSFPFDDITCKILDRA 1680
            KL E+SF FD+I+ K++DRA
Sbjct: 698  KLNEISFGFDEISIKLMDRA 717



 Score =  173 bits (439), Expect = 1e-40
 Identities = 129/512 (25%), Positives = 215/512 (41%), Gaps = 46/512 (8%)
 Frame = +1

Query: 292  NTLIDGFVKAKEISQANCLYEEMREKGVTPDAVTFNTLFYGHCKYGREEDGERLLRDISV 471
            +TL+ GF+K +   +A  +   MRE G+ P +     LF    + G      +LLR +  
Sbjct: 83   DTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIH 142

Query: 472  LGFLSHLSVSDLSIAGLCWVGXXXXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDK 651
             G        +  I G C  G           M +    P V A+N +I  Y   C   +
Sbjct: 143  QGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAY---CTRGQ 199

Query: 652  AFDV---YRVMLEFGLIPSSSTCSSLLMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTV 822
             FD     R M++ G  PS  T  +++   C  G + EA  L D M + G   N V +  
Sbjct: 200  TFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNT 259

Query: 823  LLDGYFRTGDVTGARVLWYEMEKRAVSPDAIAYSAL------------------------ 930
            L++GY +  D+  A +L+ EM+ +AV+PD   ++ L                        
Sbjct: 260  LMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSG 319

Query: 931  -----------INGLSKVGLMDEACNIFEEMLRRGYVPNNFTYNSLIGGYCHCGRLSDAL 1077
                       ++GL   G +DEA    E+ML +G  P    +NS+I  Y   G    A 
Sbjct: 320  SLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAY 379

Query: 1078 KLEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMDMLRSGLNPDIVTYNTLISGY 1257
            K  +MM + GL P   T + +I G  K  +++ A D+L +M+  GL  +   +  L+ GY
Sbjct: 380  KAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGY 439

Query: 1258 CKVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRKIKIAVKMLDELVMLGIVPNT 1437
             ++ D+  A      M   G  PD   ++  I G      +  A  +  ++   G +PN 
Sbjct: 440  FRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNN 499

Query: 1438 VTYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTVNSLLSHYCKQGMPGKALAWE 1617
              YN+++ G C   +  L  A++L  ++ +   +P++ T N +++  CK+G    A    
Sbjct: 500  FVYNSLIRGFCN--SGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVF 557

Query: 1618 QKLREVSFPFDDIT--------CKILDRANSD 1689
            + +       D +T        CK  D  ++D
Sbjct: 558  RNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTD 589



 Score =  119 bits (297), Expect = 4e-24
 Identities = 92/382 (24%), Positives = 161/382 (42%), Gaps = 1/382 (0%)
 Frame = +1

Query: 478  FLSHLSVSDLSIAGLCWVGXXXXXXXXXSDMLEKGLIPSVIAFNSIIAGYSKACLEDKAF 657
            F S  SV D  + G   V            M E GL PS  A   +     +       +
Sbjct: 75   FESDFSVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVW 134

Query: 658  DVYRVMLEFGLIPSSSTCSSLLMGLCRIGMLTEAEELMDKMLQKGFPINRVAFTVLLDGY 837
             + R M+  G  P +   +++++G CR G +   E L+  M +     +  A+ +L++ Y
Sbjct: 135  KLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAY 194

Query: 838  FRTGDVTGARVLWYEMEKRAVSPDAIAYSALINGLSKVGLMDEACNIFEEMLRRGYVPNN 1017
               G    A      M     +P  + +  +IN     G M EA N+F+ M   G++PN 
Sbjct: 195  CTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNV 254

Query: 1018 FTYNSLIGGYCHCGRLSDALKLEKMMRQRGLLPDIFTLNMIIDGFCKEGKMKRANDVLMD 1197
              YN+L+ GY     +  A  L + M+ + + PD  T N+++ G  + G+ +  + +L D
Sbjct: 255  VCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRD 314

Query: 1198 MLRSGLNPDIVTYNTLISGYCKVSDLISAEDFVTRMCANGWDPDITTYNIRIQGFCSTRK 1377
            + +SG       YN  +SG C    L  A  F+  M   G  P +  +N  I  +     
Sbjct: 315  LSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGL 374

Query: 1378 IKIAVKMLDELVMLGIVPNTVTYNTMMNGVCRDITYMLDRAMILTAKLLKMAFVPNVVTV 1557
             + A K    +V  G+ P+++T ++++ G+ +   + L  A  L  +++      N    
Sbjct: 375  EEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSK--LWRLQEARDLLYEMIVEGLPINKAAF 432

Query: 1558 NSLLSHYCKQG-MPGKALAWEQ 1620
              LL  Y + G + G    W +
Sbjct: 433  TLLLDGYFRMGDVAGAYSLWNE 454