BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013213
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   194   6e-48
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]   193   1e-47
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   192   4e-47
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi...   185   5e-45
emb|CBI41008.3| unnamed protein product [Vitis vinifera]              185   5e-45

>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  194 bits (494), Expect = 6e-48
 Identities = 94/181 (51%), Positives = 124/181 (68%)
 Frame = -2

Query: 543 SYTIVIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARM 364
           SY IVI   C MG+MD AV +LDEME K L+P+L+T+N LL   Y  GRF DGEKIW RM
Sbjct: 167 SYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRM 226

Query: 363 EKKEIVPDIRSYNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKM 184
           EKK I+PDIRSYN+KL GLV+E    + + LVE+++TK +KPD YS+NALIKG+C DGK+
Sbjct: 227 EKKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKV 286

Query: 183 DGAKRVYEDLVKSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAV 4
           D A   Y  + ++D   ++ T+   +P  CEK  +D A ELCK+  +  C +D  L+Q  
Sbjct: 287 DEATNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNA 346

Query: 3   V 1
           V
Sbjct: 347 V 347



 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
 Frame = -2

Query: 507 GNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARMEKK-EIVPDIRS 331
           G  D A  + DEM  +  + +++++N LL       +F   E  ++ +  K  + PD+ S
Sbjct: 108 GMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLSVEPDLVS 167

Query: 330 YNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLV 151
           YN  + GL + G+   AV ++++++ K L+PD  ++N L+ G    G+    ++++  + 
Sbjct: 168 YNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRME 227

Query: 150 KSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAVV 1
           K ++  +  +Y+A L  L  ++     + L ++      K DG    A++
Sbjct: 228 KKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALI 277


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  193 bits (491), Expect = 1e-47
 Identities = 94/182 (51%), Positives = 126/182 (69%), Gaps = 1/182 (0%)
 Frame = -2

Query: 543 SYTIVIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARM 364
           SY IVI+  C MG+MD AV +LDEME K L+P+L+T+N LL + Y  GRF DGEKIW RM
Sbjct: 167 SYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRM 226

Query: 363 EKKEIVPDIRSYNSKLRGLV-NEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGK 187
           EKK I+PDIRSYN+KL GLV +E    + + LVE+++TK +KPD YS+NALIKG+C DGK
Sbjct: 227 EKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGK 286

Query: 186 MDGAKRVYEDLVKSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQA 7
           +D A   Y  + ++D   ++ T+   +P  CEK  +D A ELCK+  +  C +D  L+Q 
Sbjct: 287 VDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQN 346

Query: 6   VV 1
            V
Sbjct: 347 AV 348


>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  192 bits (487), Expect = 4e-47
 Identities = 94/182 (51%), Positives = 125/182 (68%), Gaps = 1/182 (0%)
 Frame = -2

Query: 543 SYTIVIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARM 364
           SY IVI+  C MG+MD AV +LDEME K L+P+L+T+N LL   Y  GRF DGEKIW RM
Sbjct: 167 SYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRM 226

Query: 363 EKKEIVPDIRSYNSKLRGLV-NEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGK 187
           EKK I+PDIRSYN+KL GLV +E    + + LVE+++TK +KPD YS+NALIKG+C DGK
Sbjct: 227 EKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGK 286

Query: 186 MDGAKRVYEDLVKSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQA 7
           +D A   Y  + ++D   ++ T+   +P  CEK  +D A ELCK+  +  C +D  L+Q 
Sbjct: 287 VDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQN 346

Query: 6   VV 1
            V
Sbjct: 347 AV 348


>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13150-like [Vitis vinifera]
          Length = 379

 Score =  185 bits (469), Expect = 5e-45
 Identities = 82/181 (45%), Positives = 129/181 (71%)
 Frame = -2

Query: 543 SYTIVIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARM 364
           SY I++ AFC MG++D A+S+LDEME  GL+P+L+T+N LL   Y+ G ++DGEKIW  M
Sbjct: 165 SYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLM 224

Query: 363 EKKEIVPDIRSYNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKM 184
           +K  + P++RSYN+KLRG+++E    +AV+L++++KT  +KPD ++ N+L+KG+C  G +
Sbjct: 225 KKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNL 284

Query: 183 DGAKRVYEDLVKSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAV 4
           + AKR Y ++ +++L   R TY   +PFL EK D+D+A ELCK+       I+  L+Q V
Sbjct: 285 EEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQV 344

Query: 3   V 1
           +
Sbjct: 345 L 345



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/162 (20%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
 Frame = -2

Query: 507 GNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARMEKK-EIVPDIRS 331
           G  + A  L DE+     +  +V++N LL       +F   +  +  +     +VPD+ S
Sbjct: 106 GMFEHAHKLFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVS 165

Query: 330 YNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGAKRVYEDLV 151
           YN  +      G+   A+ ++++++   L+PD  ++N L+  + ++G     +++++ + 
Sbjct: 166 YNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMK 225

Query: 150 KSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKID 25
           K+++  N  +Y+A L  +  +     A+EL  +   +  K D
Sbjct: 226 KNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPD 267



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/128 (22%), Positives = 66/128 (51%)
 Frame = -2

Query: 543 SYTIVIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARM 364
           SY   ++       M +AV L+DEM+  G+KP++ T N L++     G   + ++ ++ +
Sbjct: 235 SYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEI 294

Query: 363 EKKEIVPDIRSYNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKM 184
            + E+ P   +Y + +  LV +G+   A +L +++ ++    +      +++G  K+ K+
Sbjct: 295 ARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEGLVKESKI 354

Query: 183 DGAKRVYE 160
           + A  + E
Sbjct: 355 EEATELVE 362


>emb|CBI41008.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  185 bits (469), Expect = 5e-45
 Identities = 82/181 (45%), Positives = 129/181 (71%)
 Frame = -2

Query: 543 SYTIVIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARM 364
           SY I++ AFC MG++D A+S+LDEME  GL+P+L+T+N LL   Y+ G ++DGEKIW  M
Sbjct: 175 SYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLM 234

Query: 363 EKKEIVPDIRSYNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKM 184
           +K  + P++RSYN+KLRG+++E    +AV+L++++KT  +KPD ++ N+L+KG+C  G +
Sbjct: 235 KKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNL 294

Query: 183 DGAKRVYEDLVKSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKIDGKLVQAV 4
           + AKR Y ++ +++L   R TY   +PFL EK D+D+A ELCK+       I+  L+Q V
Sbjct: 295 EEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQV 354

Query: 3   V 1
           +
Sbjct: 355 L 355



 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 35/170 (20%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
 Frame = -2

Query: 531 VIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARMEKK- 355
           +I  +   G  D A  + DEM  +  + +++++N LL       +F   +  +  +    
Sbjct: 108 LISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKIDGFFQELPGNL 167

Query: 354 EIVPDIRSYNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKMDGA 175
            +VPD+ SYN  +      G+   A+ ++++++   L+PD  ++N L+  + ++G     
Sbjct: 168 GVVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADG 227

Query: 174 KRVYEDLVKSDLGLNRWTYDAYLPFLCEKEDYDLALELCKKSMDNNCKID 25
           +++++ + K+++  N  +Y+A L  +  +     A+EL  +   +  K D
Sbjct: 228 EKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPD 277



 Score = 55.1 bits (131), Expect = 7e-06
 Identities = 28/127 (22%), Positives = 66/127 (51%)
 Frame = -2

Query: 543 SYTIVIQAFCGMGNMDKAVSLLDEMEGKGLKPNLVTYNVLLRKLYEEGRFSDGEKIWARM 364
           SY   ++       M +AV L+DEM+  G+KP++ T N L++     G   + ++ ++ +
Sbjct: 245 SYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEI 304

Query: 363 EKKEIVPDIRSYNSKLRGLVNEGNTWKAVKLVEDLKTKELKPDTYSYNALIKGYCKDGKM 184
            + E+ P   +Y + +  LV +G+   A +L +++ ++    +      +++G  K+ K+
Sbjct: 305 ARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEGLVKESKI 364

Query: 183 DGAKRVY 163
           + A  ++
Sbjct: 365 EEATELF 371