BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013181
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39452.3| unnamed protein product [Vitis vinifera]              260   2e-67
ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containi...   260   2e-67
ref|XP_002511627.1| pentatricopeptide repeat-containing protein,...   255   4e-66
ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   246   2e-63
ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containi...   246   2e-63

>emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  260 bits (664), Expect = 2e-67
 Identities = 127/189 (67%), Positives = 158/189 (83%), Gaps = 1/189 (0%)
 Frame = -1

Query: 564 RLINKQAWSQTLDSSLSQFSKYLSNTTVLQTIRLIRTSSKALNFFHWAQTNHYTHNHQSY 385
           RLIN + WS  L SSL++ +  LS TTVLQT++LIRT +KAL+FF W +   +THN QSY
Sbjct: 71  RLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSY 130

Query: 384 FELLQLLGRTRNLNAARNLLFSIETKSKGNVKLHDRFFNSLIRSYGQAGLFQESLKLYMR 205
           F ++++LGR+RNLNAARN +FSIE KS G VKL DRFFNSLIRSYG AGLFQES+K++  
Sbjct: 131 FLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKT 190

Query: 204 MKQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEMLSS-GVSPDVYTFNTLIRGFCMNS 28
           MK++GV+PSV+TFNSL +I+L+RGRT+MAK+LFDEML + GV+PD YTFN LIRGFCMNS
Sbjct: 191 MKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS 250

Query: 27  MVDDGFRFF 1
           MVD+GF FF
Sbjct: 251 MVDEGFWFF 259


>ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  260 bits (664), Expect = 2e-67
 Identities = 127/189 (67%), Positives = 158/189 (83%), Gaps = 1/189 (0%)
 Frame = -1

Query: 564 RLINKQAWSQTLDSSLSQFSKYLSNTTVLQTIRLIRTSSKALNFFHWAQTNHYTHNHQSY 385
           RLIN + WS  L SSL++ +  LS TTVLQT++LIRT +KAL+FF W +   +THN QSY
Sbjct: 71  RLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSY 130

Query: 384 FELLQLLGRTRNLNAARNLLFSIETKSKGNVKLHDRFFNSLIRSYGQAGLFQESLKLYMR 205
           F ++++LGR+RNLNAARN +FSIE KS G VKL DRFFNSLIRSYG AGLFQES+K++  
Sbjct: 131 FLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKT 190

Query: 204 MKQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEMLSS-GVSPDVYTFNTLIRGFCMNS 28
           MK++GV+PSV+TFNSL +I+L+RGRT+MAK+LFDEML + GV+PD YTFN LIRGFCMNS
Sbjct: 191 MKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS 250

Query: 27  MVDDGFRFF 1
           MVD+GF FF
Sbjct: 251 MVDEGFWFF 259


>ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548807|gb|EEF50296.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1163

 Score =  255 bits (652), Expect = 4e-66
 Identities = 126/189 (66%), Positives = 153/189 (80%), Gaps = 1/189 (0%)
 Frame = -1

Query: 564 RLINKQAWSQTLDSSLSQFSKYLSNTTVLQTIRLIRTSSKALNFFHWAQTNHYTHNHQSY 385
           RLIN + WS  L+SSLS  S  +S TTV + +RLI+T SKAL FF+WA    +THN QSY
Sbjct: 62  RLINSKPWSTELESSLSSLSPSISKTTVFEVLRLIKTPSKALQFFNWAPELGFTHNDQSY 121

Query: 384 FELLQLLGRTRNLNAARNLLFSIETKSKGNVKLHDRFFNSLIRSYGQAGLFQESLKLYMR 205
           F +L++LGR RNLN ARN LFSI+ +S G VKL DRFFNSLIRSYG+AGLFQES++++  
Sbjct: 122 FLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNS 181

Query: 204 MKQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEMLSS-GVSPDVYTFNTLIRGFCMNS 28
           MK +GV+PSV+TFNSL  ILL+RGRTNMA+ +FDEMLS+ GV+PD YTFN LIRGFC NS
Sbjct: 182 MKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNS 241

Query: 27  MVDDGFRFF 1
           MVD+GFRFF
Sbjct: 242 MVDEGFRFF 250



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
 Frame = -1

Query: 273 FNSLIRSYGQAGLFQESLKLYMRMKQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEML 94
           FN LIR + +  +  E  + +  M +    P ++T+N+L   L R G+ N+A  + + M+
Sbjct: 230 FNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMV 289

Query: 93  --SSGVSPDVYTFNTLIRGFCMNSMVDDGFRFF 1
             S+ ++PDV T+ TL+RG+CM   +D+    F
Sbjct: 290 KKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVF 322


>ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  246 bits (629), Expect = 2e-63
 Identities = 121/188 (64%), Positives = 150/188 (79%), Gaps = 1/188 (0%)
 Frame = -1

Query: 561 LINKQAWSQTLDSSLSQFSKYLSNTTVLQTIRLIRTSSKALNFFHWAQTNHYTHNHQSYF 382
           +IN + WS  L+SSL+  S  LS TTVLQT+  +R +SKAL FF+WAQ   YTH  QSYF
Sbjct: 56  MINSKPWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYF 115

Query: 381 ELLQLLGRTRNLNAARNLLFSIETKSKGNVKLHDRFFNSLIRSYGQAGLFQESLKLYMRM 202
            +L++LGR R+LN ARN LFSIE +S+G VKL  RFFNSL+R++ +AGLFQES+K++  M
Sbjct: 116 SMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIM 175

Query: 201 KQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEMLSS-GVSPDVYTFNTLIRGFCMNSM 25
           K  GV+PSV+TFNSL  ILL+RGRTNMAKK++DEMLS+ GV+PD +TFN LIRGFCMN M
Sbjct: 176 KSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGM 235

Query: 24  VDDGFRFF 1
           VDDGFR F
Sbjct: 236 VDDGFRIF 243



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = -1

Query: 273 FNSLIRSYGQAGLFQESLKLYMRMKQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEM- 97
           FN LIR +   G+  +  +++  + + G  P V+T+N+L   L R G+  +A  +   M 
Sbjct: 223 FNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMG 282

Query: 96  -LSSGVSPDVYTFNTLIRGFCMNSMVDDGFRFF 1
             S  ++P+V T+ TLIRG+C    ++     F
Sbjct: 283 KKSVDLNPNVVTYTTLIRGYCAKREIEKALAVF 315


>ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  246 bits (629), Expect = 2e-63
 Identities = 121/188 (64%), Positives = 150/188 (79%), Gaps = 1/188 (0%)
 Frame = -1

Query: 561 LINKQAWSQTLDSSLSQFSKYLSNTTVLQTIRLIRTSSKALNFFHWAQTNHYTHNHQSYF 382
           +IN + WS  L+SSL+  S  LS TTVLQT+  +R +SKAL FF+WAQ   YTH  QSYF
Sbjct: 56  MINSKPWSSDLESSLASLSPSLSQTTVLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYF 115

Query: 381 ELLQLLGRTRNLNAARNLLFSIETKSKGNVKLHDRFFNSLIRSYGQAGLFQESLKLYMRM 202
            +L++LGR R+LN ARN LFSIE +S+G VKL  RFFNSL+R++ +AGLFQES+K++  M
Sbjct: 116 SMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIM 175

Query: 201 KQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEMLSS-GVSPDVYTFNTLIRGFCMNSM 25
           K  GV+PSV+TFNSL  ILL+RGRTNMAKK++DEMLS+ GV+PD +TFN LIRGFCMN M
Sbjct: 176 KSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGM 235

Query: 24  VDDGFRFF 1
           VDDGFR F
Sbjct: 236 VDDGFRIF 243



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = -1

Query: 273 FNSLIRSYGQAGLFQESLKLYMRMKQLGVAPSVITFNSLFAILLRRGRTNMAKKLFDEM- 97
           FN LIR +   G+  +  +++  + + G  P V+T+N+L   L R G+  +A  +   M 
Sbjct: 223 FNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMG 282

Query: 96  -LSSGVSPDVYTFNTLIRGFCMNSMVDDGFRFF 1
             S  ++P+V T+ TLIRG+C    ++     F
Sbjct: 283 KKSVDLNPNVVTYTTLIRGYCAKREIEKALAVF 315