BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013140
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002511057.1| pentatricopeptide repeat-containing protein,...   105   4e-21
ref|XP_002318193.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20
emb|CBI29768.3| unnamed protein product [Vitis vinifera]               90   2e-16
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...    84   1e-14

>ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  117 bits (293), Expect = 1e-24
 Identities = 59/89 (66%), Positives = 71/89 (79%)
 Frame = -3

Query: 269 FVQDVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFE 90
           F+ DV V NSIV MYAK GN+E A+LVFDR++E++GISWNSMLSGY QNGR ++ALSLF 
Sbjct: 264 FIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN 323

Query: 89  KMLVCAGARARSNPVTALIMVSACAYLGS 3
           +M     +    NPVTALIMVSAC+YLGS
Sbjct: 324 QM---QASECDPNPVTALIMVSACSYLGS 349



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/88 (37%), Positives = 50/88 (56%)
 Frame = -3

Query: 269 FVQDVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFE 90
           F  D+FV+ ++V MYAK G + +A  VFDR+  +D + W +M++ Y Q  R  +AL LF 
Sbjct: 163 FGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFR 222

Query: 89  KMLVCAGARARSNPVTALIMVSACAYLG 6
           KM          + +TA+ + SA   LG
Sbjct: 223 KM---QEEGFLGDEITAISVASAVGQLG 247



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = -3

Query: 260 DVFVDNSIVAMYAKSGNLEEAKLVFDRIK--EKDGISWNSMLSGYVQNGRASEALSLFEK 87
           D  + N+I+ MY K G+L+ A  +F+  +  E+D  SWN ++SGY  +G   EAL LF +
Sbjct: 368 DTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSR 427

Query: 86  MLVCAGARARSNPVTALIMVSACAYLG 6
           M V        N +T   ++SAC++ G
Sbjct: 428 MQV---EGVEPNDITFTSILSACSHAG 451


>ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550172|gb|EEF51659.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 543

 Score =  105 bits (262), Expect = 4e-21
 Identities = 53/89 (59%), Positives = 70/89 (78%)
 Frame = -3

Query: 269 FVQDVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFE 90
           F++++FV NSI+AM+ K GN+E++ L+FD + E++ ISWNSMLSGY QNG+ASEAL LF+
Sbjct: 272 FLKEIFVANSILAMHTKCGNMEKSCLIFDMMDERNVISWNSMLSGYTQNGQASEALFLFD 331

Query: 89  KMLVCAGARARSNPVTALIMVSACAYLGS 3
           KM     +    N VTALIMV+ACAYLGS
Sbjct: 332 KM---RDSGCEPNSVTALIMVAACAYLGS 357


>ref|XP_002318193.1| predicted protein [Populus trichocarpa] gi|222858866|gb|EEE96413.1|
           predicted protein [Populus trichocarpa]
          Length = 533

 Score =  103 bits (256), Expect = 2e-20
 Identities = 52/87 (59%), Positives = 68/87 (78%)
 Frame = -3

Query: 266 VQDVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFEK 87
           ++++ V NSI+AM+ K GN E+A+LVFD + E+D ISWNSMLSGY QNG+A+EAL LF++
Sbjct: 91  IEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDE 150

Query: 86  MLVCAGARARSNPVTALIMVSACAYLG 6
           M     +  +  PVTALIMVSACAYLG
Sbjct: 151 M---RDSDCQPTPVTALIMVSACAYLG 174



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = -3

Query: 260 DVFVDNSIVAMYAKSGNLEEAKLVFDRIK--EKDGISWNSMLSGYVQNGRASEALSLFEK 87
           D  + N+++ MYAK G+LE+A  +F+ I   E++  SWN ++SGY  +G   EAL LF +
Sbjct: 194 DTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSR 253

Query: 86  MLVCAGARARSNPVTALIMVSACAYLG 6
           M          N  T   ++SAC++ G
Sbjct: 254 M---QEEGVEPNHFTFTSILSACSHAG 277


>emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
 Frame = -3

Query: 269 FVQDVFVDNSIVAMYAKSGN----LEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEAL 102
           F+ D     S+ +   + G+    +  A+LVFDR++E++GISWNSMLSGY QNGR ++AL
Sbjct: 229 FLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDAL 288

Query: 101 SLFEKMLVCAGARARSNPVTALIMVSACAYLGS 3
           SLF +M     +    NPVTALIMVSAC+YLGS
Sbjct: 289 SLFNQM---QASECDPNPVTALIMVSACSYLGS 318



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/88 (37%), Positives = 50/88 (56%)
 Frame = -3

Query: 269 FVQDVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFE 90
           F  D+FV+ ++V MYAK G + +A  VFDR+  +D + W +M++ Y Q  R  +AL LF 
Sbjct: 163 FGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFR 222

Query: 89  KMLVCAGARARSNPVTALIMVSACAYLG 6
           KM          + +TA+ + SA   LG
Sbjct: 223 KM---QEEGFLGDEITAISVASAVGQLG 247



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = -3

Query: 260 DVFVDNSIVAMYAKSGNLEEAKLVFDRIK--EKDGISWNSMLSGYVQNGRASEALSLFEK 87
           D  + N+I+ MY K G+L+ A  +F+  +  E+D  SWN ++SGY  +G   EAL LF +
Sbjct: 337 DTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSR 396

Query: 86  MLVCAGARARSNPVTALIMVSACAYLG 6
           M V        N +T   ++SAC++ G
Sbjct: 397 MQV---EGVEPNDITFTSILSACSHAG 420


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491679|gb|AES72882.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 705

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/85 (45%), Positives = 61/85 (71%)
 Frame = -3

Query: 260 DVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFEKML 81
           D+FV NS++ MY K G +E+ +LVF+R+ E+D +SWN+M+ GY QNG  +EAL +F +ML
Sbjct: 425 DIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREML 484

Query: 80  VCAGARARSNPVTALIMVSACAYLG 6
           V   +  R + VT + ++SAC++ G
Sbjct: 485 V---SGERPDHVTMIGVLSACSHAG 506



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 52/86 (60%)
 Frame = -3

Query: 260 DVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFEKML 81
           DV++ +++V MY+K   +  A+  FD +  ++ +SWNS+++ Y QNG A +AL +F +M+
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM 244

Query: 80  VCAGARARSNPVTALIMVSACAYLGS 3
            C       + +T   + SACA L +
Sbjct: 245 NCG---IEPDEITLASVASACASLSA 267



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 23/58 (39%), Positives = 43/58 (74%)
 Frame = -3

Query: 266 VQDVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLF 93
           ++DV  + S+V+ YAK+ +++ A+L+F  + E++ +SWN++++GY QNG   EA+ LF
Sbjct: 316 LRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLF 373



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 24/62 (38%), Positives = 41/62 (66%)
 Frame = -3

Query: 269 FVQDVFVDNSIVAMYAKSGNLEEAKLVFDRIKEKDGISWNSMLSGYVQNGRASEALSLFE 90
           F  ++F+ N +V +Y K G LE+A+ VFD +++++  SWN++L    + G   EAL+LF+
Sbjct: 50  FSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFK 109

Query: 89  KM 84
            M
Sbjct: 110 CM 111