BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013108
         (982 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35820.3| unnamed protein product [Vitis vinifera]              366   5e-99
ref|XP_002268906.1| PREDICTED: probable complex I intermediate-a...   362   8e-98
ref|XP_002314650.1| predicted protein [Populus trichocarpa] gi|2...   362   8e-98
emb|CAN61795.1| hypothetical protein VITISV_015801 [Vitis vinifera]   357   2e-96
ref|XP_003632879.1| PREDICTED: probable complex I intermediate-a...   352   6e-95

>emb|CBI35820.3| unnamed protein product [Vitis vinifera]
          Length = 225

 Score =  366 bits (939), Expect = 5e-99
 Identities = 173/225 (76%), Positives = 194/225 (86%)
 Frame = +1

Query: 13  MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 192
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 193 SLEIDDTEREPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIALKL 372
           SLEI D      GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIALK+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 373 KGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITKIPLERYLPTWRGNVIDA 552
           KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITKIPL  YLPTWRGNVIDA
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKIPLAHYLPTWRGNVIDA 180

Query: 553 KMEMNPSRIVGMSLSVNXXXXXXXXXXXXXDFKLEMDWIKALRTQ 687
           ++EMNPSRIVGMSLSVN             DFKLE+DWIKALRTQ
Sbjct: 181 EIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 225


>ref|XP_002268906.1| PREDICTED: probable complex I intermediate-associated protein
           30-like isoform 1 [Vitis vinifera]
          Length = 227

 Score =  362 bits (929), Expect = 8e-98
 Identities = 173/227 (76%), Positives = 194/227 (85%), Gaps = 2/227 (0%)
 Frame = +1

Query: 13  MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 192
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 193 SLEIDDTER--EPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIAL 366
           SLEI D        GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIAL
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 367 KLKGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITKIPLERYLPTWRGNVI 546
           K+KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITKIPL  YLPTWRGNVI
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKIPLAHYLPTWRGNVI 180

Query: 547 DAKMEMNPSRIVGMSLSVNXXXXXXXXXXXXXDFKLEMDWIKALRTQ 687
           DA++EMNPSRIVGMSLSVN             DFKLE+DWIKALRTQ
Sbjct: 181 DAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 227


>ref|XP_002314650.1| predicted protein [Populus trichocarpa] gi|222863690|gb|EEF00821.1|
           predicted protein [Populus trichocarpa]
          Length = 225

 Score =  362 bits (929), Expect = 8e-98
 Identities = 172/225 (76%), Positives = 191/225 (84%)
 Frame = +1

Query: 13  MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 192
           MSRFRSL + ++DATKKALTWNV+DLMPP+ER IFNFNS+EE+K+WHLYSDSEYGG S+A
Sbjct: 1   MSRFRSLWQASLDATKKALTWNVEDLMPPTERLIFNFNSREELKKWHLYSDSEYGGSSSA 60

Query: 193 SLEIDDTEREPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIALKL 372
           SLE  D     +G+FSGNLS+DV E SKW I+RSGFCGMRSK+FDGFIDLD+YDTIALKL
Sbjct: 61  SLEFMDEGNGLKGVFSGNLSLDVAEGSKWNISRSGFCGMRSKKFDGFIDLDAYDTIALKL 120

Query: 373 KGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITKIPLERYLPTWRGNVIDA 552
           KGDGR YISTIYTENWVNSPGQ EDNSWQAFVFVPKDNWYI +IPL RYLPTWRGNVIDA
Sbjct: 121 KGDGRSYISTIYTENWVNSPGQMEDNSWQAFVFVPKDNWYIARIPLARYLPTWRGNVIDA 180

Query: 553 KMEMNPSRIVGMSLSVNXXXXXXXXXXXXXDFKLEMDWIKALRTQ 687
            MEMN SRI+GMSLSVN             DFK+E+DWIKA RTQ
Sbjct: 181 SMEMNQSRILGMSLSVNAGGGIPGARSGPGDFKVELDWIKAFRTQ 225


>emb|CAN61795.1| hypothetical protein VITISV_015801 [Vitis vinifera]
          Length = 237

 Score =  357 bits (916), Expect = 2e-96
 Identities = 173/237 (72%), Positives = 194/237 (81%), Gaps = 12/237 (5%)
 Frame = +1

Query: 13  MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 192
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 193 SLEIDDTEREPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIALKL 372
           SLEI D      GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIALK+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 373 KGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITK------------IPLER 516
           KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITK            IPL  
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKANLTVILDYHTTIPLAH 180

Query: 517 YLPTWRGNVIDAKMEMNPSRIVGMSLSVNXXXXXXXXXXXXXDFKLEMDWIKALRTQ 687
           YLPTWRGNVIDA++EMNPSRIVGMSLSVN             DFKLE+DWIKALRTQ
Sbjct: 181 YLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 237


>ref|XP_003632879.1| PREDICTED: probable complex I intermediate-associated protein
           30-like isoform 2 [Vitis vinifera]
          Length = 241

 Score =  352 bits (904), Expect = 6e-95
 Identities = 173/241 (71%), Positives = 194/241 (80%), Gaps = 16/241 (6%)
 Frame = +1

Query: 13  MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 192
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 193 SLEIDDTER--EPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIAL 366
           SLEI D        GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIAL
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 367 KLKGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITK--------------I 504
           K+KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITK              I
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKASSVLLKLILVSFQI 180

Query: 505 PLERYLPTWRGNVIDAKMEMNPSRIVGMSLSVNXXXXXXXXXXXXXDFKLEMDWIKALRT 684
           PL  YLPTWRGNVIDA++EMNPSRIVGMSLSVN             DFKLE+DWIKALRT
Sbjct: 181 PLAHYLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRT 240

Query: 685 Q 687
           Q
Sbjct: 241 Q 241