BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013048
         (1649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   454   e-125
ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containi...   422   e-115
emb|CBI36964.3| unnamed protein product [Vitis vinifera]              419   e-114
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2...   409   e-112
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,...   405   e-110

>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  454 bits (1169), Expect = e-125
 Identities = 243/486 (50%), Positives = 321/486 (66%), Gaps = 43/486 (8%)
 Frame = +2

Query: 224  SGAARGRRMCTLAIQETKP---------RNETNLPLYRRLSALGITGESVSKTMNEYVRE 376
            +GA   RR+CT A   T+P         R+     LY RLSALG TG SV+ T+NE+++E
Sbjct: 12   AGAGLARRLCTAAAA-TEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEHIKE 70

Query: 377  GKTLRKNEIESCVKQLRKFKRYHHALELMEWMETRGNNLSYSDYAVRLDLLSKTKGLNKA 556
            GK + K+E+ SC+KQLRK++++ HALE+M+WME R    SY+DYAVRLDLLSKTKGL  A
Sbjct: 71   GKLIAKHELSSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATA 130

Query: 557  VEYFDNLPDPAKNHLTYGALLNCYCKNENTEKALDLFEKMSEKNIAST-LAFNNLMTLHM 733
             EYF+NL   AKN LTYG LLNCYCK +  EKAL LFEKM E N AST L FNNLM+LHM
Sbjct: 131  EEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHM 190

Query: 734  KLAT---------------------------------KDIEGVERVLKEMETKDSERCDW 814
            +L                                    DIEG ERVL+E++ ++ ++  W
Sbjct: 191  RLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSW 250

Query: 815  STYSNLASIYIKAGIIDXXXXXXXXXXXXXXPSYRTAYHFLISLYASTSNLSEVHRVWSS 994
            +TYSNLA++Y+ A + +                 R AYHFLISLYA  +NLSEV+RVW+S
Sbjct: 251  TTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNRVWNS 310

Query: 995  LKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFKDWETSCSSYDMRLANTVVSAYLRRDM 1174
            LKSA P TNN+SY +MLQ+L+ L+D+DGL  CF++W++SC S+D+RLAN  V A+L  DM
Sbjct: 311  LKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDM 370

Query: 1175 VKEARLICEDAIKRGPGLNYRTHELFMDFFIRNLQLDSALSCMEACISIVKKKKNEWKPT 1354
            +K+A  I  +A+KR  G  Y   ++FM   ++  ++D+AL  MEA  S V  K NEW+P 
Sbjct: 371  IKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEV--KNNEWQPA 428

Query: 1355 PERVMAFLKHCEEQKNVTGAEEFCKMLKNVDCLDSNVYCLLLSTYISANKKEPGMRKRLE 1534
            PERV+AFLK+ EE+K+V GAE+FCK+LKN+  LDSN Y LLL T ++A + EP MRKR++
Sbjct: 429  PERVLAFLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTEPEMRKRMK 488

Query: 1535 MDSIKV 1552
             D I+V
Sbjct: 489  EDDIEV 494


>ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
            mitochondrial-like [Cucumis sativus]
            gi|449518825|ref|XP_004166436.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g02370,
            mitochondrial-like [Cucumis sativus]
          Length = 474

 Score =  422 bits (1084), Expect = e-115
 Identities = 215/466 (46%), Positives = 304/466 (65%), Gaps = 35/466 (7%)
 Frame = +2

Query: 302  LYRRLSALGITGESVSKTMNEYVREGKTLRKNEIESCVKQLRKFKRYHHALELMEWMETR 481
            LY RLSALG TG SV+KT+N+++ EG  ++K E+E C+K+LRK++RYHH L++MEWMETR
Sbjct: 11   LYPRLSALGATGGSVAKTINQFIMEGNIVKKYELEKCIKELRKYRRYHHCLQIMEWMETR 70

Query: 482  GNNLSYSDYAVRLDLLSKTKGLNKAVEYFDNLPDPAKNHLTYGALLNCYCKNENTEKALD 661
              N S++DYA+RLDL+SK  G+  A +YF +LP  AKN  TYGALLNCYCK    EKAL 
Sbjct: 71   KINYSFTDYALRLDLISKVNGVTAAEKYFYDLPPSAKNRCTYGALLNCYCKEMMEEKALT 130

Query: 662  LFEKMSEKNIASTLAFNNLMTLHMKL---------------------------------A 742
            LF+KM E  I+++L+FNNLMT++M++                                 +
Sbjct: 131  LFKKMDELKISTSLSFNNLMTMYMRMDHPEKVPPLIGEMKQRGFYLTTFTYNVWMNSCAS 190

Query: 743  TKDIEGVERVLKEMETKDSERCDWSTYSNLASIYIKAGIIDXXXXXXXXXXXXXXPSY-- 916
              DI  VE +L+EM+ +D  + DW+TYSNLAS Y+KAG  +                   
Sbjct: 191  LNDIGKVEEILEEMKMEDRNKFDWTTYSNLASFYVKAGQFEKAELALKKLEEEMKSDKND 250

Query: 917  RTAYHFLISLYASTSNLSEVHRVWSSLKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFK 1096
            R  YH LISLYASTSNLSEV+R+W++LKS   T  N+SYLVMLQ+L KL D++GL + +K
Sbjct: 251  RLVYHCLISLYASTSNLSEVNRIWNALKSVYSTMTNISYLVMLQALRKLKDIEGLKRTYK 310

Query: 1097 DWETSCSSYDMRLANTVVSAYLRRDMVKEARLICEDAIKRGPGLNYRTHELFMDFFIRNL 1276
            +WE++C ++D+R+ N ++ AYL++DM ++A +I EDA KR  G   R  E+FM +F++  
Sbjct: 311  EWESNCRNFDLRIVNDIIGAYLQQDMYEDAAMIFEDATKRSKGPFSRAREMFMVYFLKLK 370

Query: 1277 QLDSALSCMEACISIVKKKKNEWKPTPERVMAFLKHCEEQKNVTGAEEFCKMLKNVDCLD 1456
            Q+DSA S +E+ +S  + K+ EW P+     AFL + EE+K+V GAE+F ++LK + CLD
Sbjct: 371  QVDSAFSHLESALS--ESKEKEWHPSLATTTAFLNYFEEEKDVEGAEDFARILKRLKCLD 428

Query: 1457 SNVYCLLLSTYISANKKEPGMRKRLEMDSIKVTXXXXXXXXKVCMQ 1594
            ++ Y LLL TY++A K  P MRKRL+ D I+++         VC Q
Sbjct: 429  ASGYHLLLKTYVAAGKLAPDMRKRLKEDDIEISSELEELLGTVCPQ 474


>emb|CBI36964.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  419 bits (1077), Expect = e-114
 Identities = 224/450 (49%), Positives = 296/450 (65%), Gaps = 43/450 (9%)
 Frame = +2

Query: 224  SGAARGRRMCTLAIQETKP---------RNETNLPLYRRLSALGITGESVSKTMNEYVRE 376
            +GA   RR+CT A   T+P         R+     LY RLSALG TG SV+ T+NE+++E
Sbjct: 51   AGAGLARRLCTAAAA-TEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEHIKE 109

Query: 377  GKTLRKNEIESCVKQLRKFKRYHHALELMEWMETRGNNLSYSDYAVRLDLLSKTKGLNKA 556
            GK + K+E+ SC+KQLRK++++ HALE+M+WME R    SY+DYAVRLDLLSKTKGL  A
Sbjct: 110  GKLIAKHELSSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATA 169

Query: 557  VEYFDNLPDPAKNHLTYGALLNCYCKNENTEKALDLFEKMSEKNIAST-LAFNNLMTLHM 733
             EYF+NL   AKN LTYG LLNCYCK +  EKAL LFEKM E N AST L FNNLM+LHM
Sbjct: 170  EEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHM 229

Query: 734  KLAT---------------------------------KDIEGVERVLKEMETKDSERCDW 814
            +L                                    DIEG ERVL+E++ ++ ++  W
Sbjct: 230  RLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSW 289

Query: 815  STYSNLASIYIKAGIIDXXXXXXXXXXXXXXPSYRTAYHFLISLYASTSNLSEVHRVWSS 994
            +TYSNLA++Y+ A + +                 R AYHFLISLYA  +NLSEV+RVW+S
Sbjct: 290  TTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNRVWNS 349

Query: 995  LKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFKDWETSCSSYDMRLANTVVSAYLRRDM 1174
            LKSA P TNN+SY +MLQ+L+ L+D+DGL  CF++W++SC S+D+RLAN  V A+L  DM
Sbjct: 350  LKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDM 409

Query: 1175 VKEARLICEDAIKRGPGLNYRTHELFMDFFIRNLQLDSALSCMEACISIVKKKKNEWKPT 1354
            +K+A  I  +A+KR  G  Y   ++FM   ++  ++D+AL  MEA  S V  K NEW+P 
Sbjct: 410  IKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEV--KNNEWQPA 467

Query: 1355 PERVMAFLKHCEEQKNVTGAEEFCKMLKNV 1444
            PERV+AFLK+ EE+K+V GAE+FCK+LKN+
Sbjct: 468  PERVLAFLKYFEEEKDVEGAEKFCKILKNI 497


>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
            predicted protein [Populus trichocarpa]
          Length = 473

 Score =  409 bits (1052), Expect = e-112
 Identities = 219/463 (47%), Positives = 296/463 (63%), Gaps = 34/463 (7%)
 Frame = +2

Query: 302  LYRRLSALGITGESVSKTMNEYVREGKTLRKNEIESCVKQLRKFKRYHHALELMEWMETR 481
            LY+RLS LG +GESVSKT+N++V EG    K ++ +C+++LRK+ R+ +A+E+MEWM+ R
Sbjct: 15   LYKRLSELGASGESVSKTLNDFVLEGGKTNKVDLLACIRELRKYGRFDYAIEVMEWMQKR 74

Query: 482  GNNLSYSDYAVRLDLLSKTKGLNKAVEYFDNLPDPAKNHLTYGALLNCYCKNENTEKALD 661
              N+S+   AV LDL++K +G+  A  YFD L    +NH T+GALL+CYC+   +EKAL 
Sbjct: 75   KMNVSH---AVYLDLIAKKEGIAAAENYFDGLSPSEQNHSTHGALLSCYCRELMSEKALT 131

Query: 662  LFEKMSE-KNIASTLAFNNLMTLHMKL--------------------------------- 739
            LFEKM + K + ++L FNNL++LH++L                                 
Sbjct: 132  LFEKMDKMKFLLTSLPFNNLISLHLRLDQPEKVLPIVQEMKQKGVSPCTFTYNMWMQSYG 191

Query: 740  ATKDIEGVERVLKEMETKDSERCDWSTYSNLASIYIKAGIIDXXXXXXXXXXXXXXPSYR 919
               D EGVERVL EM+    +   W+TY+NLA+IY+KAG  D                YR
Sbjct: 192  CLNDFEGVERVLDEMKMDGQKNFSWTTYTNLATIYVKAGHFDKAESALKKVEEQIERDYR 251

Query: 920  TAYHFLISLYASTSNLSEVHRVWSSLKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFKD 1099
             AYHFLI+LYA TSNL EV+RVW+SLKS   TT N+SYL ML +L+KL D++GL KCFK+
Sbjct: 252  EAYHFLITLYAGTSNLGEVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLKCFKE 311

Query: 1100 WETSCSSYDMRLANTVVSAYLRRDMVKEARLICEDAIKRGPGLNYRTHELFMDFFIRNLQ 1279
            WE+SC SYDMRLAN  + A L  DM +EA LI +DA+KR  GL +   E+FM FF++N Q
Sbjct: 312  WESSCHSYDMRLANVAIRACLEHDMYEEAALIFDDALKRTEGLFFNAREMFMVFFLKNHQ 371

Query: 1280 LDSALSCMEACISIVKKKKNEWKPTPERVMAFLKHCEEQKNVTGAEEFCKMLKNVDCLDS 1459
            LD AL  M+A  S V  K+ EW+P P+ V AF  + E++K+V GAE  CK+LK+++ LDS
Sbjct: 372  LDLALKHMKAAFSEV--KEIEWQPEPKTVSAFFAYFEDEKDVNGAERLCKILKHINRLDS 429

Query: 1460 NVYCLLLSTYISANKKEPGMRKRLEMDSIKVTXXXXXXXXKVC 1588
            N Y LLL TYI+A K  P MR+RLE D I++         +VC
Sbjct: 430  NAYDLLLKTYIAAGKLAPEMRQRLEEDGIEINPELENLLERVC 472


>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  405 bits (1040), Expect = e-110
 Identities = 213/465 (45%), Positives = 298/465 (64%), Gaps = 36/465 (7%)
 Frame = +2

Query: 302  LYRRLSALGITGESVSKTMNEYVREGKTLRKNEIESCVKQLRKFKRYHHALELMEWMETR 481
            LY +LSALG TG SVS+T+NE++ EGKT+ K E+  C+++LRK++R+ HA E+MEWME R
Sbjct: 40   LYHKLSALGATGGSVSRTLNEHIMEGKTITKIELSRCIRELRKYRRFDHAFEIMEWMEKR 99

Query: 482  GNNLSYSDYAVRLDLLSKTKGLNKAVEYFDNLPDPAKNHLT-YGALLNCYCKNENTEKAL 658
              N SY+D A+RLDL+ K +G+  A +YF+ L   AKNH T YGALLNCYCK   ++KAL
Sbjct: 100  KMNFSYADRAIRLDLIGKARGIAAAEDYFNGLSPSAKNHHTSYGALLNCYCKELMSDKAL 159

Query: 659  DLFEKMSEKN-IASTLAFNNLMTLHMKLAT------------------------------ 745
             LF++M EK  + S+L FNNLM+++M+L                                
Sbjct: 160  ALFQEMDEKKFLYSSLPFNNLMSMYMRLGQPEKVPPLVDEMKKRKVSPCSFTYNIWMQSY 219

Query: 746  ---KDIEGVERVLKEMETKDS-ERCDWSTYSNLASIYIKAGIIDXXXXXXXXXXXXXXPS 913
                D +GV+RVL+E+      +   W+TYSNLA+IY+KAGI +                
Sbjct: 220  GCLNDFQGVDRVLREIVNDGGKDNLQWTTYSNLATIYLKAGIFEKAESALKKLEAIMGFR 279

Query: 914  YRTAYHFLISLYASTSNLSEVHRVWSSLKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCF 1093
             R AYHFLIS+YA T N +EV+RVW  LKS+    NNLSYLVMLQ+L+KL D++G+ KCF
Sbjct: 280  NREAYHFLISIYAGTGNSNEVNRVWGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCF 339

Query: 1094 KDWETSCSSYDMRLANTVVSAYLRRDMVKEARLICEDAIKRGPGLNYRTHELFMDFFIRN 1273
            ++WE+ C++YDMR+AN  +  +L+ DM +EA LI +DA+KR  G  ++  E FM FF++ 
Sbjct: 340  REWESGCTNYDMRIANVAIRVFLQHDMYEEAELIFDDALKRTRGPFFKARERFMLFFLKI 399

Query: 1274 LQLDSALSCMEACISIVKKKKNEWKPTPERVMAFLKHCEEQKNVTGAEEFCKMLKNVDCL 1453
             QLD AL  M A  S  + +K+EWKP  E V A+  +   +K+V GAE+  K+LK+++CL
Sbjct: 400  HQLDLALKHMRAAFS--ESEKHEWKPLQETVNAYFDYFRTEKDVDGAEKLSKILKHINCL 457

Query: 1454 DSNVYCLLLSTYISANKKEPGMRKRLEMDSIKVTXXXXXXXXKVC 1588
            +S+VY LLL TYI+A K  P MR+RLE D+I+++         VC
Sbjct: 458  NSSVYSLLLKTYIAAGKLAPEMRQRLEEDNIEISDELEYLLESVC 502