BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00013002
         (804 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_007475941.1| photosystem II protein D1 [Bismarckia nobili...   369   e-100
ref|YP_007475599.1| photosystem II protein D1 [Heliconia collins...   369   e-100
gb|AAV97756.1| PsbA [Pellia appalachiana]                             369   e-100
ref|YP_086946.1| photosystem II protein D1 [Panax ginseng] gi|75...   369   e-100
ref|YP_024363.1| photosystem II protein D1 [Saccharum hybrid cul...   369   e-100

>ref|YP_007475941.1| photosystem II protein D1 [Bismarckia nobilis]
           gi|449326424|gb|AGE93006.1| photosystem II protein D1
           [Bismarckia nobilis]
          Length = 353

 Score =  369 bits (948), Expect = e-100
 Identities = 182/195 (93%), Positives = 182/195 (93%)
 Frame = -3

Query: 586 NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 407
           NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT
Sbjct: 26  NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 85

Query: 406 SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXX 227
           SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI  
Sbjct: 86  SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAV 145

Query: 226 XXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 47
                      VFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV
Sbjct: 146 AYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 205

Query: 46  FGGSLFSAMHGSLVT 2
           FGGSLFSAMHGSLVT
Sbjct: 206 FGGSLFSAMHGSLVT 220


>ref|YP_007475599.1| photosystem II protein D1 [Heliconia collinsiana]
           gi|449326078|gb|AGE92664.1| photosystem II protein D1
           [Heliconia collinsiana]
          Length = 353

 Score =  369 bits (948), Expect = e-100
 Identities = 182/195 (93%), Positives = 182/195 (93%)
 Frame = -3

Query: 586 NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 407
           NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT
Sbjct: 26  NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 85

Query: 406 SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXX 227
           SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI  
Sbjct: 86  SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAV 145

Query: 226 XXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 47
                      VFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV
Sbjct: 146 AYSAPVAAAAAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 205

Query: 46  FGGSLFSAMHGSLVT 2
           FGGSLFSAMHGSLVT
Sbjct: 206 FGGSLFSAMHGSLVT 220


>gb|AAV97756.1| PsbA [Pellia appalachiana]
          Length = 353

 Score =  369 bits (948), Expect = e-100
 Identities = 182/195 (93%), Positives = 182/195 (93%)
 Frame = -3

Query: 586 NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 407
           NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT
Sbjct: 26  NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 85

Query: 406 SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXX 227
           SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI  
Sbjct: 86  SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAV 145

Query: 226 XXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 47
                      VFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV
Sbjct: 146 AYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 205

Query: 46  FGGSLFSAMHGSLVT 2
           FGGSLFSAMHGSLVT
Sbjct: 206 FGGSLFSAMHGSLVT 220


>ref|YP_086946.1| photosystem II protein D1 [Panax ginseng]
           gi|75254109|sp|Q68S26.1|PSBA_PANGI RecName:
           Full=Photosystem Q(B) protein; AltName: Full=32 kDa
           thylakoid membrane protein; AltName: Full=Photosystem II
           protein D1; Flags: Precursor gi|51235293|gb|AAT98489.1|
           PSII 32 kDa protein [Panax ginseng]
           gi|290488428|gb|ADD30598.1| photosystem II protein D1
           [Meliosma aff. cuneifolia Moore 333]
           gi|408901308|gb|AFU95388.1| PsbA, partial (chloroplast)
           [Caloncoba echinata] gi|408901324|gb|AFU95396.1| PsbA,
           partial (chloroplast) [Euphronia guianensis]
          Length = 353

 Score =  369 bits (948), Expect = e-100
 Identities = 182/195 (93%), Positives = 182/195 (93%)
 Frame = -3

Query: 586 NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 407
           NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT
Sbjct: 26  NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 85

Query: 406 SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXX 227
           SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI  
Sbjct: 86  SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAV 145

Query: 226 XXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 47
                      VFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV
Sbjct: 146 AYSAPVAAAAAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 205

Query: 46  FGGSLFSAMHGSLVT 2
           FGGSLFSAMHGSLVT
Sbjct: 206 FGGSLFSAMHGSLVT 220


>ref|YP_024363.1| photosystem II protein D1 [Saccharum hybrid cultivar SP-80-3280]
           gi|118614472|ref|YP_899387.1| photosystem II protein D1
           [Sorghum bicolor] gi|159106844|ref|YP_001531263.1| psbA
           gene product (chloroplast) [Lolium perenne]
           gi|260677374|ref|YP_003208168.1| photosystem II protein
           D1 [Coix lacryma-jobi] gi|345895197|ref|YP_004841929.1|
           photosystem II protein D1 [Panicum virgatum]
           gi|427436955|ref|YP_007026447.1| photosystem II protein
           D1 [Festuca altissima] gi|427437052|ref|YP_007026619.1|
           photosystem II protein D1 [Festuca pratensis]
           gi|427437198|ref|YP_007026705.1| photosystem II protein
           D1 [Lolium multiflorum]
           gi|75261503|sp|Q6L3B5.1|PSBA_SACHY RecName:
           Full=Photosystem Q(B) protein; AltName: Full=32 kDa
           thylakoid membrane protein; AltName: Full=Photosystem II
           protein D1; Flags: Precursor
           gi|110826010|sp|P0C157.1|PSBA_SACOF RecName:
           Full=Photosystem Q(B) protein; AltName: Full=32 kDa
           thylakoid membrane protein; AltName: Full=Photosystem II
           protein D1; Flags: Precursor
           gi|190360068|sp|A8Y9F0.1|PSBA_LOLPR RecName:
           Full=Photosystem Q(B) protein; AltName: Full=32 kDa
           thylakoid membrane protein; AltName: Full=Photosystem II
           protein D1; Flags: Precursor
           gi|190360079|sp|A1E9Q4.1|PSBA_SORBI RecName:
           Full=Photosystem Q(B) protein; AltName: Full=32 kDa
           thylakoid membrane protein; AltName: Full=Photosystem II
           protein D1; Flags: Precursor gi|48478657|gb|AAT44677.1|
           photosystem II protein D1 [Saccharum hybrid cultivar
           SP80-3280] gi|118201106|gb|ABK79476.1| photosystem II
           protein D1 [Sorghum bicolor]
           gi|158934378|emb|CAO85956.1| photosystem II protein D1
           (chloroplast) [Lolium perenne]
           gi|169667039|gb|ACA64050.1| photosystem II D1 protein
           [Lolium multiflorum] gi|209361312|gb|ACI43227.1|
           photosystem II protein D1 [Coix lacryma-jobi]
           gi|319412299|gb|ADV41835.1| photosystem II protein D1
           (chloroplast) [Panicum virgatum]
           gi|319412386|gb|ADV41921.1| photosystem II protein D1
           (chloroplast) [Panicum virgatum]
           gi|410177746|gb|AFV62627.1| photosystem II protein D1
           [Festuca altissima] gi|410177920|gb|AFV62799.1|
           photosystem II protein D1 [Festuca pratensis]
           gi|410178007|gb|AFV62885.1| photosystem II protein D1
           [Lolium multiflorum]
          Length = 353

 Score =  369 bits (948), Expect = e-100
 Identities = 182/195 (93%), Positives = 182/195 (93%)
 Frame = -3

Query: 586 NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 407
           NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT
Sbjct: 26  NRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPT 85

Query: 406 SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXX 227
           SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI  
Sbjct: 86  SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAV 145

Query: 226 XXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 47
                      VFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV
Sbjct: 146 AYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 205

Query: 46  FGGSLFSAMHGSLVT 2
           FGGSLFSAMHGSLVT
Sbjct: 206 FGGSLFSAMHGSLVT 220