BLASTX nr result

ID: Coptis23_contig00012900 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012900
         (218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527423.1| multidrug resistance-associated protein 1, 3...    60   2e-07
ref|XP_003532999.1| PREDICTED: ABC transporter C family member 8...    57   1e-06
ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8...    55   8e-06
emb|CBI35971.3| unnamed protein product [Vitis vinifera]               55   8e-06

>ref|XP_002527423.1| multidrug resistance-associated protein 1, 3 (mrp1, 3),
           abc-transoprter, putative [Ricinus communis]
           gi|223533233|gb|EEF34989.1| multidrug
           resistance-associated protein 1, 3 (mrp1, 3),
           abc-transoprter, putative [Ricinus communis]
          Length = 1475

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = -2

Query: 217 GDFYGICQGEFNLGSPCIQKIIVDGXXXXXXXXXXXXXLVEYVRRHSISQNTRKDWVFLA 38
           G+   IC+ + +LGSPC Q+II+D              L+  +R+H +S + R+DW+ + 
Sbjct: 16  GELSWICEEKLDLGSPCTQRIIIDIINLVFLGVFYLFLLLGSIRKHQVSGSNRRDWISVV 75

Query: 37  CSVCCLIISIAH 2
            S+CC +ISIA+
Sbjct: 76  VSICCTLISIAY 87


>ref|XP_003532999.1| PREDICTED: ABC transporter C family member 8-like [Glycine max]
          Length = 1494

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 31/71 (43%), Positives = 38/71 (53%)
 Frame = -2

Query: 214 DFYGICQGEFNLGSPCIQKIIVDGXXXXXXXXXXXXXLVEYVRRHSISQNTRKDWVFLAC 35
           DF   C  +F+L S C Q  I+D              LV  +RRHS   + RK+WVFL  
Sbjct: 35  DFSWTCLRDFDLTSLCSQTSIIDILKLLFIAVFYTSLLVSLIRRHSECGSNRKNWVFLVV 94

Query: 34  SVCCLIISIAH 2
           SVCC +ISIAH
Sbjct: 95  SVCCALISIAH 105


>ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera]
          Length = 1462

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = -2

Query: 217 GDFYGICQGEFNLGSPCIQKIIVDGXXXXXXXXXXXXXLVEYVRRHSISQNTRKDWVFLA 38
           G F  +C  E +LGS CIQ+ I+D              ++ Y+R+H IS  +R+DWV   
Sbjct: 9   GGFSWVCGEELDLGSFCIQRTILDVLNLLFLSVFSVILVIGYIRKHEISGCSRRDWVSGG 68

Query: 37  CSVCCLIISIAH 2
            S+CC +  IA+
Sbjct: 69  VSICCALTGIAY 80


>emb|CBI35971.3| unnamed protein product [Vitis vinifera]
          Length = 2772

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = -2

Query: 217 GDFYGICQGEFNLGSPCIQKIIVDGXXXXXXXXXXXXXLVEYVRRHSISQNTRKDWVFLA 38
           G F  +C  E +LGS CIQ+ I+D              ++ Y+R+H IS  +R+DWV   
Sbjct: 31  GGFSWVCGEELDLGSFCIQRTILDVLNLLFLSVFSVILVIGYIRKHEISGCSRRDWVSGG 90

Query: 37  CSVCCLIISIAH 2
            S+CC +  IA+
Sbjct: 91  VSICCALTGIAY 102


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