BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012850
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...    98   8e-19
ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi...    96   3e-18
ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_002879744.1| pentatricopeptide repeat-containing protein ...    90   2e-16
ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...    88   8e-16

>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Glycine max]
          Length = 499

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 45/100 (45%), Positives = 66/100 (66%)
 Frame = +3

Query: 3   TPYAYSFVVKSLFKNSQLDQLPCVLDHMRNVERFEPPERIFVEIIRIYGCENRIRDAVDM 182
           TP AY FV+K+L   SQL  +P VL H+ ++E+FE PE I V +IR YG  +R++DAVD+
Sbjct: 81  TPKAYFFVLKTLTSTSQLQDIPPVLYHLEHLEKFETPESILVYLIRFYGLSDRVQDAVDL 140

Query: 183 FFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKS 302
           FF+IP FRC P            C++++ + +V ++LLKS
Sbjct: 141 FFRIPRFRCTPTVCSLNLVLSLLCRKRDCLEMVPEILLKS 180


>ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Vitis vinifera]
          Length = 505

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 46/100 (46%), Positives = 62/100 (62%)
 Frame = +3

Query: 3   TPYAYSFVVKSLFKNSQLDQLPCVLDHMRNVERFEPPERIFVEIIRIYGCENRIRDAVDM 182
           TP AY FV+ +L +  Q   LP +L  +  VE+FE PE IF  +I++YG  N   DAVD+
Sbjct: 76  TPNAYRFVISTLTRCRQFHHLPPLLHRLEKVEKFETPEFIFTNLIKVYGNANMFEDAVDL 135

Query: 183 FFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKS 302
           FF+IP+FRC P            CKR+EG+ +V Q+LLKS
Sbjct: 136 FFRIPNFRCVPSVYSLNALLYVLCKRREGLVMVPQILLKS 175


>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
           predicted protein [Populus trichocarpa]
          Length = 506

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 41/99 (41%), Positives = 60/99 (60%)
 Frame = +3

Query: 6   PYAYSFVVKSLFKNSQLDQLPCVLDHMRNVERFEPPERIFVEIIRIYGCENRIRDAVDMF 185
           P A+ F+ K+L K SQ   +P VLDH+  VE FEPPE  F  +I +YG  N+  +A+++F
Sbjct: 77  PKAFDFIFKTLVKTSQFHHIPSVLDHLEKVESFEPPESTFAYLIEVYGRTNKTHEAIELF 136

Query: 186 FKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKS 302
           ++IP FRC P            C+  +G+ LV ++LLKS
Sbjct: 137 YRIPKFRCVPSVYSLNTLISVLCRNSKGLKLVPEILLKS 175


>ref|XP_002879744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325583|gb|EFH56003.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 444

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 41/100 (41%), Positives = 64/100 (64%)
 Frame = +3

Query: 3   TPYAYSFVVKSLFKNSQLDQLPCVLDHMRNVERFEPPERIFVEIIRIYGCENRIRDAVDM 182
           TP AY FV+++L K SQL+ +  VLDH+   E+F+ PE IF ++I  YG   RI +A+D+
Sbjct: 62  TPQAYRFVIETLAKTSQLENIASVLDHLEVSEKFDTPESIFRDVIAAYGFSGRIEEAIDV 121

Query: 183 FFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKS 302
           FFKIP+FRC P             ++++ + LV ++L+K+
Sbjct: 122 FFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKA 161


>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498545|gb|AES79748.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 653

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
 Frame = +3

Query: 3   TPYAYSFVVKSL--FKNSQLDQLPCVLDHMRNVERFEPPERIFVEIIRIYGCENRIRDAV 176
           +P AY F++K++     S L ++P +L+H+ + E+FE PE IF+ +IR YG  +R++DAV
Sbjct: 73  SPKAYFFLIKTITNINTSHLHEIPHILNHLEHNEKFETPEFIFMYLIRFYGFNDRVQDAV 132

Query: 177 DMFFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKS 302
           D+FF+IP FRC P            C ++E + +V  +LLKS
Sbjct: 133 DLFFRIPRFRCTPTVCSLNLLLSLLCGKRECLRMVPDILLKS 174