BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012808
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
emb|CBI29835.3| unnamed protein product [Vitis vinifera]              159   2e-37
ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35
ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea ma...   144   1e-32
ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containi...   143   1e-32

>ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  159 bits (403), Expect = 2e-37
 Identities = 76/111 (68%), Positives = 89/111 (80%)
 Frame = +2

Query: 2   CKIAKYGDSVKFFDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDI 181
           CK++KYG+++ F DEMMDLKIPL+KEVYSS IC YSK GQ+  AES+FT MK  GC PD+
Sbjct: 560 CKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDV 619

Query: 182 ITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           ITYTAM+ AYD A NWEKA ALF +ME +  QPDSIA SSLM+A N GGQP
Sbjct: 620 ITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQP 670



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/112 (27%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
 Frame = +2

Query: 5   KIAKYGDSVKFFDEMMDLKIPLTKEV--YSSAICVYSKVGQLDRAESLFTMMKTNGCYPD 178
           K+ + G ++  F+ M + +     +V  +++ I +YS  GQ++  ++ F  M   G  P+
Sbjct: 314 KLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPN 373

Query: 179 IITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           I++Y A++ AY + G  ++A+++F +++ NG  PD ++ +SL+ A    G+P
Sbjct: 374 IVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKP 425



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 28/83 (33%), Positives = 51/83 (61%)
 Frame = +2

Query: 83  YSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDAAGNWEKAYALFKDME 262
           Y+S +  Y K G+ ++A  +F +M+ N C P++++Y A++ AY + G   +A  +  +ME
Sbjct: 412 YTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEME 471

Query: 263 MNGTQPDSIAISSLMKALNGGGQ 331
            NG QP+ ++I +L+ A    GQ
Sbjct: 472 RNGVQPNIVSICTLLAACGRCGQ 494



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/82 (32%), Positives = 49/82 (59%)
 Frame = +2

Query: 83  YSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDAAGNWEKAYALFKDME 262
           Y++ I  Y+  G    A S+F  +K NG +PD+++YT+++ AY  +G  EKA  +F+ M 
Sbjct: 377 YNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMR 436

Query: 263 MNGTQPDSIAISSLMKALNGGG 328
            N  +P+ ++ ++L+ A    G
Sbjct: 437 RNHCKPNLVSYNALIDAYGSKG 458


>emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  159 bits (403), Expect = 2e-37
 Identities = 76/111 (68%), Positives = 89/111 (80%)
 Frame = +2

Query: 2   CKIAKYGDSVKFFDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDI 181
           CK++KYG+++ F DEMMDLKIPL+KEVYSS IC YSK GQ+  AES+FT MK  GC PD+
Sbjct: 560 CKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDV 619

Query: 182 ITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           ITYTAM+ AYD A NWEKA ALF +ME +  QPDSIA SSLM+A N GGQP
Sbjct: 620 ITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQP 670



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/112 (27%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
 Frame = +2

Query: 5   KIAKYGDSVKFFDEMMDLKIPLTKEV--YSSAICVYSKVGQLDRAESLFTMMKTNGCYPD 178
           K+ + G ++  F+ M + +     +V  +++ I +YS  GQ++  ++ F  M   G  P+
Sbjct: 314 KLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPN 373

Query: 179 IITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           I++Y A++ AY + G  ++A+++F +++ NG  PD ++ +SL+ A    G+P
Sbjct: 374 IVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKP 425



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 28/83 (33%), Positives = 51/83 (61%)
 Frame = +2

Query: 83  YSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDAAGNWEKAYALFKDME 262
           Y+S +  Y K G+ ++A  +F +M+ N C P++++Y A++ AY + G   +A  +  +ME
Sbjct: 412 YTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEME 471

Query: 263 MNGTQPDSIAISSLMKALNGGGQ 331
            NG QP+ ++I +L+ A    GQ
Sbjct: 472 RNGVQPNIVSICTLLAACGRCGQ 494



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/82 (32%), Positives = 49/82 (59%)
 Frame = +2

Query: 83  YSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDAAGNWEKAYALFKDME 262
           Y++ I  Y+  G    A S+F  +K NG +PD+++YT+++ AY  +G  EKA  +F+ M 
Sbjct: 377 YNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMR 436

Query: 263 MNGTQPDSIAISSLMKALNGGG 328
            N  +P+ ++ ++L+ A    G
Sbjct: 437 RNHCKPNLVSYNALIDAYGSKG 458


>ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  153 bits (386), Expect = 2e-35
 Identities = 67/111 (60%), Positives = 93/111 (83%)
 Frame = +2

Query: 2   CKIAKYGDSVKFFDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDI 181
           CK++KYG+++ F +E+M LK+PL+KEVYSSAIC YSK GQ+  AES F +MK++GCYPD+
Sbjct: 549 CKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDV 608

Query: 182 ITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           +TYTAM+ AY+AA NWEKAYALF++ME +  + D+IA ++LM++ N GGQP
Sbjct: 609 VTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQP 659



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
 Frame = +2

Query: 5   KIAKYGDSVKFFDEMMDLKIPLTKEV--YSSAICVYSKVGQLDRAESLFTMMKTNGCYPD 178
           K+ +Y  +++ F+ M + K   T +V  ++S I +YS  GQ++  E+ F MM   G  P+
Sbjct: 303 KLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPN 362

Query: 179 IITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           I++Y A++ AY A G   +A+  F +++ NG +PD ++ +SL+ A     +P
Sbjct: 363 IVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKP 414


>ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
           gi|224029903|gb|ACN34027.1| unknown [Zea mays]
           gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein
           ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  144 bits (362), Expect = 1e-32
 Identities = 65/111 (58%), Positives = 85/111 (76%)
 Frame = +2

Query: 2   CKIAKYGDSVKFFDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDI 181
           CK+ +Y +S+KFF++M+DL I LTKEVYSS IC Y K G+L  A S F  MK  GC+PD+
Sbjct: 551 CKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDV 610

Query: 182 ITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           +TYT +++AY   G+W +A+ LFK+ME NGTQPD+I  SSLM+ALN GGQP
Sbjct: 611 LTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQP 661



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
 Frame = +2

Query: 5   KIAKYGDSVKFFDEMMDLKIPLTKEV--YSSAICVYSKVGQLDRAESLFTMMKTNGCYPD 178
           KI  YG++++ F+ M + +     +V  Y+S +  YS  GQ +  +++F +M   G  P+
Sbjct: 305 KIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPN 364

Query: 179 IITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           I++Y A++ AY + G   +A   FK ++ NG +PD ++ +SL+ A     QP
Sbjct: 365 IVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQP 416



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/77 (37%), Positives = 50/77 (64%)
 Frame = +2

Query: 83  YSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDAAGNWEKAYALFKDME 262
           Y+S +  Y +  Q ++A  +F  M+ N C P+ ++Y A++ AY +AG  ++A +L  +ME
Sbjct: 403 YTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEME 462

Query: 263 MNGTQPDSIAISSLMKA 313
            +G QPD I+IS+L+ A
Sbjct: 463 QDGIQPDVISISTLLTA 479



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +2

Query: 83  YSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDAAGNWEKAYALFKDME 262
           Y++ +  Y+  G    A   F ++K NG  PDI++YT+++ AY  +   EKA  +F +M 
Sbjct: 368 YNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMR 427

Query: 263 MNGTQPDSIAISSLMKALNGGG 328
            N  +P+ ++ ++L+ A    G
Sbjct: 428 KNACKPNKVSYNALIDAYGSAG 449



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/98 (32%), Positives = 48/98 (48%)
 Frame = +2

Query: 38  FDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDA 217
           F EM + +     + Y+S I  +++ GQ   A ++   M+     P   TY  ++ A  A
Sbjct: 176 FFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGA 235

Query: 218 AGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQ 331
           AGNW+KA  L K M  NG  PD I  + ++ A   G Q
Sbjct: 236 AGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQ 273



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
 Frame = +2

Query: 11  AKYGDSVKFFDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMM--KTNGCYPDII 184
           A+Y  ++ +F+ M   K+       +  I    K+G    A  LF  M  +   C+PD++
Sbjct: 272 AQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVV 331

Query: 185 TYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGG 328
           TYT++M +Y   G  E   A+F  M   G +P+ ++ ++L+ A    G
Sbjct: 332 TYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHG 379


>ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  143 bits (361), Expect = 1e-32
 Identities = 66/110 (60%), Positives = 86/110 (78%)
 Frame = +2

Query: 2   CKIAKYGDSVKFFDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDI 181
           CK+ KY +S+KFF++M+DL+IPLTKEVYSS IC Y K G+L  AES F+ MK +GC PD+
Sbjct: 553 CKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDV 612

Query: 182 ITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQ 331
           +TYTAM++AY+  G+W  A+ LFK+ME N  QPD+I  SSLM+ALN G Q
Sbjct: 613 LTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQ 662



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 32/112 (28%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
 Frame = +2

Query: 5   KIAKYGDSVKFFDEMMDLKIPLTKEV--YSSAICVYSKVGQLDRAESLFTMMKTNGCYPD 178
           K  +YG++++  + M + +     +V  Y+S +  Y   G+++  +++F MM   G  P+
Sbjct: 307 KDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPN 366

Query: 179 IITYTAMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQP 334
           I++Y A++ AY + G    A  +FK ++ NG +PD ++ ++L+ A    GQP
Sbjct: 367 IVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQP 418



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 28/77 (36%), Positives = 51/77 (66%)
 Frame = +2

Query: 83  YSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDAAGNWEKAYALFKDME 262
           Y++ +  Y + GQ ++A   F  M+ N C P+I++Y A++ AY +AG +++A +L  +ME
Sbjct: 405 YTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEME 464

Query: 263 MNGTQPDSIAISSLMKA 313
            +G  PD ++IS+L+ A
Sbjct: 465 KDGIPPDVVSISTLLTA 481



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/105 (29%), Positives = 54/105 (51%)
 Frame = +2

Query: 14  KYGDSVKFFDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYT 193
           K  D    FD M+   +      Y++ +  Y+  G    A  +F ++K NG  PD+++YT
Sbjct: 347 KVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYT 406

Query: 194 AMMQAYDAAGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGG 328
            ++ AY  +G  EKA   FK+M  N  +P+ ++ ++L+ A    G
Sbjct: 407 TLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAG 451



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/98 (31%), Positives = 48/98 (48%)
 Frame = +2

Query: 38  FDEMMDLKIPLTKEVYSSAICVYSKVGQLDRAESLFTMMKTNGCYPDIITYTAMMQAYDA 217
           F EM + +     ++Y+S I  +++ GQ   A ++   M      P   TY  ++ A  A
Sbjct: 178 FFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGA 237

Query: 218 AGNWEKAYALFKDMEMNGTQPDSIAISSLMKALNGGGQ 331
           AGNW+KA  L K M  NG  PD +  + ++ A   G Q
Sbjct: 238 AGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQ 275