BLASTX nr result

ID: Coptis23_contig00012746 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012746
         (485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15596.3| unnamed protein product [Vitis vinifera]               43   7e-07
ref|XP_002278967.2| PREDICTED: uncharacterized protein LOC100262...    42   2e-06

>emb|CBI15596.3| unnamed protein product [Vitis vinifera]
          Length = 1509

 Score = 42.7 bits (99), Expect(2) = 7e-07
 Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 4/42 (9%)
 Frame = +2

Query: 302 RSGFRVQAFEVSGPILDNFVKLGGAKVSSP----KDACTVIV 415
           R+G+ V+AFE+ GP++D F+KLGG + ++P    KD   ++V
Sbjct: 25  RAGYAVKAFEIFGPLMDGFLKLGGVRCTTPLETGKDVSALVV 66



 Score = 35.0 bits (79), Expect(2) = 7e-07
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 226 MVSTGTVGFVGLDELSLELVA 288
           M S+G VGFVGLD+LSLEL A
Sbjct: 1   MASSGAVGFVGLDDLSLELAA 21


>ref|XP_002278967.2| PREDICTED: uncharacterized protein LOC100262718 [Vitis vinifera]
          Length = 1377

 Score = 41.6 bits (96), Expect(2) = 2e-06
 Identities = 15/30 (50%), Positives = 25/30 (83%)
 Frame = +2

Query: 302 RSGFRVQAFEVSGPILDNFVKLGGAKVSSP 391
           R+G+ V+AFE+ GP++D F+KLGG + ++P
Sbjct: 25  RAGYAVKAFEIFGPLMDGFLKLGGVRCTTP 54



 Score = 35.0 bits (79), Expect(2) = 2e-06
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 226 MVSTGTVGFVGLDELSLELVA 288
           M S+G VGFVGLD+LSLEL A
Sbjct: 1   MASSGAVGFVGLDDLSLELAA 21


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