BLASTX nr result
ID: Coptis23_contig00012692
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00012692
(986 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 308 1e-81
ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containi... 308 1e-81
ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containi... 303 3e-80
ref|XP_002531063.1| pentatricopeptide repeat-containing protein,... 297 2e-78
ref|NP_177262.1| pentatricopeptide repeat-containing protein [Ar... 295 9e-78
>ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 308 bits (790), Expect = 1e-81
Identities = 169/345 (48%), Positives = 240/345 (69%), Gaps = 23/345 (6%)
Frame = +2
Query: 20 WRHYLLSLSVAMPLSKFFKRSIVKSSASLSRHFHLTHHKDPVFIPKHVSFH------NKN 181
+R L SL P + F+ + S+ S+S +T ++ + I H + H N+N
Sbjct: 3 FRQSLSSLQRLFPRTSSFQYA---SARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRN 59
Query: 182 PTFVRRNVFRSMNTQVLVEASNL------EISKDSEKLCKILTDS-----SSLDSFGITN 328
T R R +++ ++AS EI++D+EK CK+++ + SL
Sbjct: 60 YTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPME 119
Query: 329 VSLPLVVEVLKKLSNAGALALTFFRWVEKKEGYKHTNESYNALIEALGKIKQFNSIWDIV 508
+S L+VEVLKKLSNAG LAL+FFRW EK++G+KHT ESYN LIEALGKIKQFN IW++V
Sbjct: 120 LSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLV 179
Query: 509 EEMKGKGLVTKETFGLIMRRYARCRKTKEAIETFKKME*FGMKHELSDYNRLIDTL---- 676
+MK KG++++ETF LI RRYAR RK KEA+E+F+KME FG + +SD+NRL+DTL
Sbjct: 180 SDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSR 239
Query: 677 --SKAQQVFDEMKKKKRFMPDVKTYSILLEGWGEERNLEMVEDLCKRMKDEGLEPDVVTY 850
KAQ+VFD+M K RF PD+K+Y+ILLEGWG+++NL + ++ + M+DEG EPDVVT+
Sbjct: 240 NVKKAQEVFDKM-KHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTF 298
Query: 851 GIVINAYCKSKKYDEALEIFHGAILAKNLKPSPHIYCSLIHGLGA 985
GI+INA+CK++KYDEA+ +FH + AKN+KPSPH++C+LI+GLG+
Sbjct: 299 GILINAHCKARKYDEAIRLFH-EMEAKNIKPSPHVFCTLINGLGS 342
Score = 63.9 bits (154), Expect = 6e-08
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Frame = +2
Query: 425 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAI 601
+K +SY L+E G+ + + ++ EM+ +G TFG+++ + + RK EAI
Sbjct: 256 FKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAI 315
Query: 602 ETFKKME*FGMKHELSDYNRLIDTLSKAQQV-----FDEMKKKKRFMPDVKTYSILLEGW 766
F +ME +K + LI+ L +++ F E K F P+ TY+ ++ +
Sbjct: 316 RLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAY 375
Query: 767 GEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFHGAILAKNLKPS 946
+ + M+ G+ P+ TY I+++ K +K EA +F +P+
Sbjct: 376 CWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPT 435
Query: 947 PHIYCSLI 970
Y +I
Sbjct: 436 LSTYDIMI 443
>ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 308 bits (790), Expect = 1e-81
Identities = 169/345 (48%), Positives = 240/345 (69%), Gaps = 23/345 (6%)
Frame = +2
Query: 20 WRHYLLSLSVAMPLSKFFKRSIVKSSASLSRHFHLTHHKDPVFIPKHVSFH------NKN 181
+R L SL P + F+ + S+ S+S +T ++ + I H + H N+N
Sbjct: 3 FRQSLSSLQRLFPRTSSFQYA---SARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRN 59
Query: 182 PTFVRRNVFRSMNTQVLVEASNL------EISKDSEKLCKILTDS-----SSLDSFGITN 328
T R R +++ ++AS EI++D+EK CK+++ + SL
Sbjct: 60 YTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPME 119
Query: 329 VSLPLVVEVLKKLSNAGALALTFFRWVEKKEGYKHTNESYNALIEALGKIKQFNSIWDIV 508
+S L+VEVLKKLSNAG LAL+FFRW EK++G+KHT ESYN LIEALGKIKQFN IW++V
Sbjct: 120 LSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLV 179
Query: 509 EEMKGKGLVTKETFGLIMRRYARCRKTKEAIETFKKME*FGMKHELSDYNRLIDTL---- 676
+MK KG++++ETF LI RRYAR RK KEA+E+F+KME FG + +SD+NRL+DTL
Sbjct: 180 SDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSR 239
Query: 677 --SKAQQVFDEMKKKKRFMPDVKTYSILLEGWGEERNLEMVEDLCKRMKDEGLEPDVVTY 850
KAQ+VFD+M K RF PD+K+Y+ILLEGWG+++NL + ++ + M+DEG EPDVVT+
Sbjct: 240 NVKKAQEVFDKM-KHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTF 298
Query: 851 GIVINAYCKSKKYDEALEIFHGAILAKNLKPSPHIYCSLIHGLGA 985
GI+INA+CK++KYDEA+ +FH + AKN+KPSPH++C+LI+GLG+
Sbjct: 299 GILINAHCKARKYDEAIRLFH-EMEAKNIKPSPHVFCTLINGLGS 342
Score = 63.9 bits (154), Expect = 6e-08
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Frame = +2
Query: 425 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAI 601
+K +SY L+E G+ + + ++ EM+ +G TFG+++ + + RK EAI
Sbjct: 256 FKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAI 315
Query: 602 ETFKKME*FGMKHELSDYNRLIDTLSKAQQV-----FDEMKKKKRFMPDVKTYSILLEGW 766
F +ME +K + LI+ L +++ F E K F P+ TY+ ++ +
Sbjct: 316 RLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAY 375
Query: 767 GEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFHGAILAKNLKPS 946
+ + M+ G+ P+ TY I+++ K +K EA +F +P+
Sbjct: 376 CWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPT 435
Query: 947 PHIYCSLI 970
Y +I
Sbjct: 436 LSTYDIMI 443
>ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 303 bits (777), Expect = 3e-80
Identities = 167/333 (50%), Positives = 233/333 (69%), Gaps = 22/333 (6%)
Frame = +2
Query: 53 MPLSKFFKRS--IVKSSASLSRHFHLTHHKDPVFIPKHVSFHNKNP------TFVRRNVF 208
M L++F K S I+K+S + FHL + + N+N +F R
Sbjct: 1 MGLTRFLKFSPKILKTSNPFTISFHLLLADADFVRLESIKHENENSCGFSPFSFCRSIHG 60
Query: 209 RSMNTQVLVE---ASNLEISKDSEKLCKILT--DSSSLDSF---GITNVSLPLVVEVLKK 364
S+ Q E A+N I++D+ KLCK+L +SS++S +VS LV+EVLKK
Sbjct: 61 GSIRNQACTETTDATNHHIAQDTGKLCKLLCTHSNSSIESLLNGASVDVSPTLVLEVLKK 120
Query: 365 LSNAGALALTFFRWVEKKEGYKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE 544
LSN+G +AL+FFRW EK++G+K++ E+YNALIEALGKIKQF IW++V +M+ KGL+T+E
Sbjct: 121 LSNSGVIALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQE 180
Query: 545 TFGLIMRRYARCRKTKEAIETFKKME*FGMKHELSDYNRLIDTLSK------AQQVFDEM 706
TF LI RRYAR RK KEA+ETF+KME FG++ LSD+NRL+D L K AQ+VFD+M
Sbjct: 181 TFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKM 240
Query: 707 KKKKRFMPDVKTYSILLEGWGEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKK 886
K +K F PD+K+Y+ILLEGWG+E+NL ++++ + MKDEG EPD VTYGI+INA+CK+++
Sbjct: 241 KDRK-FRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARR 299
Query: 887 YDEALEIFHGAILAKNLKPSPHIYCSLIHGLGA 985
YD A+E+FH + A P+PHIYC+LI+GLG+
Sbjct: 300 YDAAVELFH-KMEANKCMPTPHIYCTLINGLGS 331
Score = 62.4 bits (150), Expect = 2e-07
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 7/185 (3%)
Frame = +2
Query: 434 TNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAIETF 610
T Y LI LG ++ E K G + T+ ++ Y + + +A
Sbjct: 318 TPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIV 377
Query: 611 KKME*FGMKHELSDYNRLIDTLSKAQQ------VFDEMKKKKRFMPDVKTYSILLEGWGE 772
+M G+ + Y+ ++ L KA++ VF M + P V TY I++ +
Sbjct: 378 DEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCN 437
Query: 773 ERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFHGAILAKNLKPSPH 952
E ++M + MK +G+ P + + +IN+ C K DEA + FH +L ++P
Sbjct: 438 EERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFH-EMLDMGIRPPAA 496
Query: 953 IYCSL 967
++ +L
Sbjct: 497 MFSNL 501
>ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529358|gb|EEF31324.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 533
Score = 297 bits (761), Expect = 2e-78
Identities = 164/331 (49%), Positives = 231/331 (69%), Gaps = 28/331 (8%)
Frame = +2
Query: 77 RSIVKSSASLSRHFHLTHH--KDPVFIPKHVSFHN--KNPTFVRRNVFRSM-----NTQV 229
RS+ S +L RH H + H + I ++ KN TF R + R++ N Q
Sbjct: 5 RSLYLLSRTLKRHDHYSTHLCSQHLIIQSFINLQQVIKNQTFTRNSRGRALLSPHLNFQR 64
Query: 230 LVEAS--------NLEISKDSEKLCKILTDS--SSLDSFGIT---NVSLPLVVEVLKKLS 370
+ A +I +D+ +C++L+ + SS++ + VS LV+EVLK+LS
Sbjct: 65 SIHADLEQNPEIFTDKIIEDTRNICRLLSKNPNSSIEKLLLGASFKVSPALVLEVLKRLS 124
Query: 371 NAGALALTFFRWVEKKEGYKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKETF 550
NAGALAL+FF+W EK++G+ + ESYNALI++LGKIKQFN IW++V +MK KG++TKETF
Sbjct: 125 NAGALALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVLTKETF 184
Query: 551 GLIMRRYARCRKTKEAIETFKKME*FGMKHELSDYNRLIDTLSK------AQQVFDEMKK 712
LI RRYAR K KEA+ TF+KME FG+K E +D+NRL+DTL K AQ VFD+M K
Sbjct: 185 ALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKM-K 243
Query: 713 KKRFMPDVKTYSILLEGWGEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYD 892
+RF+PD+K+Y+ILLEGWG+E+NL ++++ + MKDEG EPDVVTYGI+INAYCK +KYD
Sbjct: 244 IRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYD 303
Query: 893 EALEIFHGAILAKNLKPSPHIYCSLIHGLGA 985
+A+E+F + +KN +PSPHI+C+LI+GLG+
Sbjct: 304 DAIELFR-EMESKNCQPSPHIFCTLINGLGS 333
Score = 60.5 bits (145), Expect = 6e-07
Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 42/231 (18%)
Frame = +2
Query: 413 KKEGYKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLV-TKETFGLIMRRYARCRKT 589
K EG++ +Y LI A K+++++ ++ EM+ K + F ++ R+
Sbjct: 278 KDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRL 337
Query: 590 KEAIETFKKME*FGMKHELSDYN----------------RLIDTLSK------------- 682
EA+E F++ + G E YN R++D + K
Sbjct: 338 SEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDII 397
Query: 683 ------------AQQVFDEMKKKKRFMPDVKTYSILLEGWGEERNLEMVEDLCKRMKDEG 826
A VF++M ++ P V TY I++ + +E + RMK +G
Sbjct: 398 LHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKG 457
Query: 827 LEPDVVTYGIVINAYCKSKKYDEALEIFHGAILAKNLKPSPHIYCSLIHGL 979
+ P + + I+IN+ C K D A + F +L ++P ++ L L
Sbjct: 458 VHPGMHMFSILINSLCHENKLDIACKYFQ-EMLDVGIRPPAALFSHLKQAL 507
>ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g71060, mitochondrial; Flags: Precursor
gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical
protein; 31939-30407 [Arabidopsis thaliana]
gi|332197036|gb|AEE35157.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 295 bits (756), Expect = 9e-78
Identities = 163/322 (50%), Positives = 221/322 (68%), Gaps = 11/322 (3%)
Frame = +2
Query: 53 MPLSKFFKRSIVKSSASLSRHFHLTHHKDPVFIPKHVSFHNKNPTFVRRNVFRSMNTQVL 232
M S+FF+ + +LSR + + + + +K F F + + +
Sbjct: 1 MVFSRFFR----VTGVNLSRRVYSRISSSSSPSLESIPWIHKASNFTLYGSFHASSVETQ 56
Query: 233 VEASNLEISKDSEKLCKILT---DSS--SLDSFGITNVSLPLVVEVLKKLSNAGALALTF 397
V A+ + S+D+E++CKILT DS +L + +S L+ EVLKKLSNAG LAL+
Sbjct: 57 VSAN--DASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSV 114
Query: 398 FRWVEKKEGYKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKETFGLIMRRYAR 577
F+W E ++G+KHT +YNALIE+LGKIKQF IW +V++MK K L++KETF LI RRYAR
Sbjct: 115 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYAR 174
Query: 578 CRKTKEAIETFKKME*FGMKHELSDYNRLIDTLSK------AQQVFDEMKKKKRFMPDVK 739
RK KEAI F KME FG K E SD+NR++DTLSK AQ+VFD+M KKKRF PD+K
Sbjct: 175 ARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKM-KKKRFEPDIK 233
Query: 740 TYSILLEGWGEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFHGA 919
+Y+ILLEGWG+E NL V+++ + MKDEG EPDVV YGI+INA+CK+KKY+EA+ F+
Sbjct: 234 SYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFN-E 292
Query: 920 ILAKNLKPSPHIYCSLIHGLGA 985
+ +N KPSPHI+CSLI+GLG+
Sbjct: 293 MEQRNCKPSPHIFCSLINGLGS 314
Score = 65.5 bits (158), Expect = 2e-08
Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 3/197 (1%)
Frame = +2
Query: 386 ALTFFRWVEKKEGYKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGL-VTKETFGLIM 562
A+ FF +E++ K + + +LI LG K+ N + E K G + T+ ++
Sbjct: 286 AIRFFNEMEQRN-CKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALV 344
Query: 563 RRYARCRKTKEAIETFKKME*FGMKHELSDYNRLIDTLSKAQQVFD--EMKKKKRFMPDV 736
Y ++ ++A +T +M G+ Y+ ++ L + Q+ + E+ + P V
Sbjct: 345 GAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTV 404
Query: 737 KTYSILLEGWGEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFHG 916
TY I++ + + L+M + MK +G+ P + + +I A C K DEA E F+
Sbjct: 405 STYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN- 463
Query: 917 AILAKNLKPSPHIYCSL 967
+L ++P H++ L
Sbjct: 464 EMLDVGIRPPGHMFSRL 480
Score = 60.8 bits (146), Expect = 5e-07
Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 6/195 (3%)
Frame = +2
Query: 344 VVEVLKKLSNAGALALTFFRWVEKKEGYKHTNESYNALIEALGKIKQFNSIWDIVEEMKG 523
+++ L K N G F + KK+ ++ +SY L+E G+ + ++ EMK
Sbjct: 203 MLDTLSKSRNVGDAQKVFDKM--KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKD 260
Query: 524 KGLVTKET-FGLIMRRYARCRKTKEAIETFKKME*FGMKHELSDYNRLIDTLSKAQQV-- 694
+G +G+I+ + + +K +EAI F +ME K + LI+ L +++
Sbjct: 261 EGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLND 320
Query: 695 ---FDEMKKKKRFMPDVKTYSILLEGWGEERNLEMVEDLCKRMKDEGLEPDVVTYGIVIN 865
F E K F + TY+ L+ + + +E M+ +G+ P+ TY I+++
Sbjct: 321 ALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILH 380
Query: 866 AYCKSKKYDEALEIF 910
+ ++ EA E++
Sbjct: 381 HLIRMQRSKEAYEVY 395