BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012655
         (3492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   439   e-151
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   429   e-146
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   378   e-140
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       387   e-137
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   384   e-128

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  439 bits (1128), Expect(3) = e-151
 Identities = 249/685 (36%), Positives = 380/685 (55%), Gaps = 11/685 (1%)
 Frame = +3

Query: 1158 LYDHQATGCFFTWTNNGDGAIRKWSKLDRCLITIYWANQMNTSIVEFLTNVAYSDHSPIM 1337
            L +   TG F++W N   GA R  S++D+  + + W NQ    +VE+      SDHSP++
Sbjct: 173  LLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEY-REAGISDHSPLI 231

Query: 1338 LTLS--HVVRPRPPFRFCNFWSMH*VSGNFIGKLDYAYT------REPSLHV*KAQALES 1493
              L+  H    RP F+F NF +       F+  +  A+       +  ++ V + QA++ 
Sbjct: 232  FNLATQHDEGGRP-FKFLNFLADQ---NGFVEVVKEAWGSANHRFKMKNIWV-RLQAVKR 286

Query: 1494 SLKQWARVNCSNLQREVKAARLQLNEIQEQLKTNPLDQVAGALELSVRDRLIQLIRMEEM 1673
            +LK +     S    +V+  R +L  +Q   + + + +    L+   +D + QL +   +
Sbjct: 287  ALKSFHSKKFSKAHCQVEELRRKLAAVQALPEVSQVSE----LQEEEKDLIAQLRKWSTI 342

Query: 1674 D---MKHITNIDWMKYGERCNKYFFNVMKENKSRKWLWAIEDMEGNRKEGQADMASAFVE 1844
            D   +K  + I W+  G+  +K+FF  +K  K+R  +  +++  G++     ++ +    
Sbjct: 343  DESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICN 402

Query: 1845 YYTRI*GVSSTATCTSQFLNKLVLNEVDQEMGVQLTAQITGEEIRQALFEMDDNKAPGPD 2024
            +Y R+ G SS+           V  ++      QL   IT +EI QAL ++DD KAPG D
Sbjct: 403  FYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLD 462

Query: 2025 GFNAFFFKKCWNLVDENFSKAIKHIFEHNCIQKGTNATLICLIPKCISPARVDEFRPIAC 2204
            GFN+ FFKK W ++ +   + I   FE+  + K  N T + LIPK        ++RPIAC
Sbjct: 463  GFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIAC 522

Query: 2205 CNIIYKCVTKILTNRLKVCISSLISCNQSAFVPGRAIQENILLAHELLRGYKRKRRSPRC 2384
            C+ +YK ++KILT RL+  I+ ++ C Q+ F+P R I +NILLA EL+RGY R+  SPRC
Sbjct: 523  CSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRC 582

Query: 2385 TIKLDIKKAYDSVSWSALELILHRFKFPQAFITWIKMCFTSPSYSILVNGTPEGYFDGKK 2564
             IK+DI+KAYDSV W  LE +L    FP  FI WI  C  + SYSIL+NG P   FD +K
Sbjct: 583  VIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQK 642

Query: 2565 GLRQGDPISPYLFVLVMEVLTSLLNQGMSSKAFFPHSKCKQRQLSHLCFADDVLLFCRGE 2744
            GLRQGDP+SP+LF L ME L+  +        F  H KC++ +L+HL FADD+L+F R +
Sbjct: 643  GLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARAD 702

Query: 2745 PASIHAVKDILSVFPQATGLNLNYAKTTMMTGSMSFEESKELADILGIALISPPVSYLGL 2924
             +SI  +    + F +A+GL  +  K+ +  G +  EE+++LAD + + + S P  YLG+
Sbjct: 703  ASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGV 762

Query: 2925 PLTSAGLGIKDCLPLIEKIDARISNWKNKSLSRARRLQLVQSVLSSFQTYWAQTFVLPKT 3104
            PL S  L    C PLI+KI  R   W    LS A RLQLV+++L S Q YW Q F LPK 
Sbjct: 763  PLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKK 822

Query: 3105 ILERVGKICNRFLWAGRLGQT*RGP 3179
            +++ V   C +FLW G +  + + P
Sbjct: 823  LIKAVETTCRKFLWTGTVDTSYKAP 847



 Score = 92.0 bits (227), Expect(3) = e-151
 Identities = 50/161 (31%), Positives = 78/161 (48%)
 Frame = +2

Query: 644  VKVCIWNIRGMNDLNKAKDLNSFRRDKKLSCLGLLETKVRRDKYELIMSICCPNWEHMNN 823
            +K+  WN+RG+ND  K K++  F   +K+S   L ET+VR+     I       W  +NN
Sbjct: 1    MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINN 60

Query: 824  YSRDPSGRIWLAWDPDVLEVVKQVESSQMIHCTVTMLQQARQFKFTVVYASNARAERLCL 1003
            Y+  P GRIW+ W  + + +     + Q+I   V        FK   VY  +  A+R  L
Sbjct: 61   YACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVL 120

Query: 1004 WEEISALHYNLTTPSCVMGDFNNVLLSSERIGRDPVHPRET 1126
            WEE+         P  ++GD+N V  + +R+  + V   ET
Sbjct: 121  WEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAET 161



 Score = 57.0 bits (136), Expect(3) = e-151
 Identities = 27/70 (38%), Positives = 40/70 (57%)
 Frame = +2

Query: 3215 KEQGGLGILDPLTWNKAAICGLVLKIAQKGDSLWVNWTWGQQIRGRNFWTMKVPTDSSWV 3394
            K  GGL + + + WNKAAI  L+  I  K D LWV W     I+ +N   + V +++SW+
Sbjct: 857  KSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWI 916

Query: 3395 WRGILKHRQL 3424
             R I + R+L
Sbjct: 917  LRKIFESREL 926


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  429 bits (1103), Expect(3) = e-146
 Identities = 245/694 (35%), Positives = 386/694 (55%), Gaps = 8/694 (1%)
 Frame = +3

Query: 1122 KQYLLPDA*MTGLYDHQATGCFFTWTNNGDGAIRKWSKLDRCLITIYWANQMNTSIVEFL 1301
            +Q+LL     + L + ++T  +++W+N+  G  R  S++D+  + + W        V++L
Sbjct: 162  QQFLL----QSNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYL 217

Query: 1302 TNVAYSDHSPIMLTLSHVVRPR--PPFRFCNFWSMH*VSGNFIGKLDYAYTREPSLHV*K 1475
                 SDHSP++  L    RP+   PF+F N  +     G F+  ++ A+         +
Sbjct: 218  PP-GISDHSPLLFNLM-TGRPQGGKPFKFMNVMAEQ---GEFLETVEKAWNSVNGRFKLQ 272

Query: 1476 A-----QALESSLKQWARVNCSNLQREVKAARLQLNEIQEQLKTNPLDQVAGALELSVRD 1640
            A     +A++  LKQ           +VK  R QL ++Q Q   +  D +    + S+ +
Sbjct: 273  AIWLNLKAVKRELKQMKTQKIGLAHEKVKNLRHQLQDLQSQDDFDHNDIMQTDAK-SIMN 331

Query: 1641 RLIQLIRMEEMDMKHITNIDWMKYGERCNKYFFNVMKENKSRKWLWAIEDMEGNRKEGQA 1820
             L     +E+  ++  + I W++ G+  +K FF  +K   +   +  +   +G   +   
Sbjct: 332  DLRHWSHIEDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDAD 391

Query: 1821 DMASAFVEYYTRI*GVSSTATCTSQFLNKLVLNE-VDQEMGVQLTAQITGEEIRQALFEM 1997
            ++    +E+Y ++ G  ++ T     LN +   + +  +    L  ++   EI +AL  +
Sbjct: 392  EVQEEILEFYKKLLGTRAS-TLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGI 450

Query: 1998 DDNKAPGPDGFNAFFFKKCWNLVDENFSKAIKHIFEHNCIQKGTNATLICLIPKCISPAR 2177
             ++KAPG DGFNA+FFKK W  + +     I+  F ++ + +  N  ++ L+PK     R
Sbjct: 451  GNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATR 510

Query: 2178 VDEFRPIACCNIIYKCVTKILTNRLKVCISSLISCNQSAFVPGRAIQENILLAHELLRGY 2357
            V EFRPIACC +IYK ++K+LTNR+K  I  +++  QS F+PGR I +NILLA EL+RGY
Sbjct: 511  VKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGY 570

Query: 2358 KRKRRSPRCTIKLDIKKAYDSVSWSALELILHRFKFPQAFITWIKMCFTSPSYSILVNGT 2537
             RK  SPRC +K+DI+KAYDSV WS LE +L+ F FP  F+ WI  C ++ SYS+LVNG 
Sbjct: 571  TRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGI 630

Query: 2538 PEGYFDGKKGLRQGDPISPYLFVLVMEVLTSLLNQGMSSKAFFPHSKCKQRQLSHLCFAD 2717
            P   F  +KGLRQGDP+SP+LF L ME L+  L +   S  F  H KC++  ++HL FAD
Sbjct: 631  PTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFAD 690

Query: 2718 DVLLFCRGEPASIHAVKDILSVFPQATGLNLNYAKTTMMTGSMSFEESKELADILGIALI 2897
            D+L+FCR + +S+  +      F  A+GL  ++ K+ +    +  E ++ELAD + + L 
Sbjct: 691  DLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLG 750

Query: 2898 SPPVSYLGLPLTSAGLGIKDCLPLIEKIDARISNWKNKSLSRARRLQLVQSVLSSFQTYW 3077
              P  YLG+PLTS  L    C PL+E I  R   W  K LS A RLQL++S+LSS Q YW
Sbjct: 751  ELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYW 810

Query: 3078 AQTFVLPKTILERVGKICNRFLWAGRLGQT*RGP 3179
            A  F L K +++ V K+C +FLW G+  +T + P
Sbjct: 811  AHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAP 844



 Score = 88.2 bits (217), Expect(3) = e-146
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
 Frame = +2

Query: 650  VCI-WNIRGMNDLNKAKDLNSFRRDKKLSCLGLLETKVRRDKYELIMSICCPNWEHMNNY 826
            +C+ WN+RGMND  K K++ +F    K+    LLET+VR      +      +W+ +NNY
Sbjct: 2    LCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNY 61

Query: 827  SRDPSGRIWLAWDPDVLEVVKQVESSQMIHCTVTMLQQARQFKFTVVYASNARAERLCLW 1006
            S     RIW+ W P  + V       Q++ C +    Q+ + K   VY  +  A+R  LW
Sbjct: 62   SHSARERIWIGWRPAWVNVTLTHTQEQLMVCDIQ--DQSHKLKMVAVYGLHTIADRKSLW 119

Query: 1007 EEISALHYNLTTPSCVMGDFNNVLLSSERIGRDPVHPRETIPFARCL 1147
              +         P  ++GDFN V  S++R+    V   ET  F + L
Sbjct: 120  SGLLQC-VQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFL 165



 Score = 52.4 bits (124), Expect(3) = e-146
 Identities = 24/74 (32%), Positives = 41/74 (55%)
 Frame = +2

Query: 3197 ATSRLEKEQGGLGILDPLTWNKAAICGLVLKIAQKGDSLWVNWTWGQQIRGRNFWTMKVP 3376
            AT +  K +GG  +++   WN+AA+  L+  I  K D LWV W     I+ ++  T+ + 
Sbjct: 848  ATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNIS 907

Query: 3377 TDSSWVWRGILKHR 3418
              ++W+ R I+K R
Sbjct: 908  NQTTWILRKIVKAR 921


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  378 bits (970), Expect(3) = e-140
 Identities = 235/696 (33%), Positives = 369/696 (53%), Gaps = 14/696 (2%)
 Frame = +3

Query: 1101 GTQFTQGKQYLLPDA*MTGLYDHQATGCFFTWTNNGDG-AIRKWSKLDRCLITIYWANQM 1277
            G++ T+G +        + + D    G  +TW NN +   I K  K+DR L+   W    
Sbjct: 157  GSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAK--KIDRILVNDSWLIAS 214

Query: 1278 NTSIVEFLTNVAYSDHSPIMLTLSHVVRPR-PPFRFCNFWSMH*VSGNFIGKLDYAYTRE 1454
              S   F   + +SDH P  + +S+    R  PF+  NF   H     FI K+   + R 
Sbjct: 215  PLSYGSFCA-MEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHH---PEFIEKIRVTWDRL 270

Query: 1455 P-------SLHV*KAQALESSLKQWARVNCSNLQREVKAARLQLNEIQEQLKTNPLDQVA 1613
                    +L   K++ L+ +++ + R + S L++ V  A   L   Q  L   P   +A
Sbjct: 271  AYQGSAMFTLSK-KSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSYLA 329

Query: 1614 GALELSVRDRLIQLIRMEEMDMKHITNIDWMKYGERCNKYFFNVMKENKSRKWLWAIEDM 1793
            G LE        +L   EE  +   + + W+K G+    +F  +M   ++   +  + D 
Sbjct: 330  G-LEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQ 388

Query: 1794 EGNRKEGQADMASAFVEYYTRI*GVSS---TATCTSQFLNKLVLNEVDQEMGVQLTAQIT 1964
             G R E   ++ +  V+++  + G SS   +A   SQ +N L   + D+     L A+++
Sbjct: 389  TGRRIENTDELQTHCVDFFKELFGSSSHLISAEGISQ-INSLTRFKCDENTRQLLEAEVS 447

Query: 1965 GEEIRQALFEMDDNKAPGPDGFNAFFFKKCWNLVDENFSKAIKHIFEHNCIQKGTNATLI 2144
              +I+   F +  NK+PGPDG+ + FFKK W++V  +   A++  F    +    N+T +
Sbjct: 448  EADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAV 507

Query: 2145 CLIPKCISPARVDEFRPIACCNIIYKCVTKILTNRLKVCISSLISCNQSAFVPGRAIQEN 2324
             ++PK  +  R+ EFRPI+CCN IYK ++K+L  RL+  +   IS +QSAFV GR + EN
Sbjct: 508  TMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTEN 567

Query: 2325 ILLAHELLRGYKRKRRSPRCTIKLDIKKAYDSVSWSALELILHRFKFPQAFITWIKMCFT 2504
            +LLA EL++G+ +   S R  +K+D++KA+DSV W  +   L     P  F+ WIK C T
Sbjct: 568  VLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCIT 627

Query: 2505 SPSYSILVNGTPEGYFDGKKGLRQGDPISPYLFVLVMEVLTSLLNQGMSSKAFFPHSKCK 2684
            S S+SI V+G+  GYF G KGLRQGDP+SP LFV+ ME+L+ LL    S  +   H K  
Sbjct: 628  STSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKAS 687

Query: 2685 QRQLSHLCFADDVLLFCRGEPASIHAVKDILSVFPQATGLNLNYAKTTMMTGSMSFEESK 2864
            + ++S L FADD+++F  G+ +S+  +K +L  F   +GL +N  K+ + T  +   E  
Sbjct: 688  EVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGL---EDT 744

Query: 2865 ELADILGIALISP--PVSYLGLPLTSAGLGIKDCLPLIEKIDARISNWKNKSLSRARRLQ 3038
            +  D L    ++   P  YLGLPL    L   D   LI+KI AR ++W  K+LS A RLQ
Sbjct: 745  DKEDTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQ 804

Query: 3039 LVQSVLSSFQTYWAQTFVLPKTILERVGKICNRFLW 3146
            L+ SV+ S   +W  +F+LPK  L+ + ++CNRFLW
Sbjct: 805  LISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLW 840



 Score = 89.4 bits (220), Expect(3) = e-140
 Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
 Frame = +2

Query: 641  MVKVCIWNIRGMNDLNKAKDLNSFRRDKKLSCLGLLETKVRRDKYELIMSICCPNWEHMN 820
            M+    WN+RG N+  + ++   + +  K     +LET+V+  +    +    P W+ + 
Sbjct: 1    MIDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVC 60

Query: 821  NYSRDPSGRIWLAWDPDVLEVVKQVESSQMIHCTVTMLQQARQFKFTVVYASNARAERLC 1000
            NY     GRIW+ WDP V EV    +S Q I CTV +   + +F  T VYA N R  R  
Sbjct: 61   NYEFAALGRIWVVWDPAV-EVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRR 119

Query: 1001 LWEEISALHYNLTT---PSCVMGDFNNVL 1078
            LW E+  L  N TT   P  ++GDFN  L
Sbjct: 120  LWSELELLAANQTTSDKPWIILGDFNQSL 148



 Score = 84.7 bits (208), Expect(3) = e-140
 Identities = 38/100 (38%), Positives = 57/100 (57%)
 Frame = +2

Query: 3191 SHATSRLEKEQGGLGILDPLTWNKAAICGLVLKIAQKGDSLWVNWTWGQQIRGRNFWTMK 3370
            S   S L K +GGLG+ +  TWNK     L+  +  + DSLWV W    ++R  NFW  +
Sbjct: 853  SWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAE 912

Query: 3371 VPTDSSWVWRGILKHRQLAMKFVKYFIVNGESTSFWHDPW 3490
              +  SW+W+ IL  R LA +F++  + NG+  S+W+D W
Sbjct: 913  AASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHW 952


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  387 bits (995), Expect(3) = e-137
 Identities = 232/682 (34%), Positives = 356/682 (52%), Gaps = 13/682 (1%)
 Frame = +3

Query: 1158 LYDHQATGCFFTWTNNGDGA-IRKWSKLDRCLITIYWANQMNTSIVEFLTNVAYSDHSPI 1334
            L D +  G  FTW N      + K  K+DR L+   W N +  S +    ++ +SDH   
Sbjct: 178  LSDLRYKGNTFTWWNKSHTTPVAK--KIDRILVNDSW-NALFPSSLGIFGSLDFSDHVSC 234

Query: 1335 MLTLSHV-VRPRPPFRFCNFWSMH*----------VSGNFIGKLDYAYTREPSLHV*KAQ 1481
             + L    ++ + PF+F N+   +            + N +G   +  ++       K +
Sbjct: 235  GVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSK-------KLK 287

Query: 1482 ALESSLKQWARVNCSNLQREVKAARLQLNEIQEQLKTNPLDQVAGALELSVRDRLIQLIR 1661
            AL+  +K ++R+N S L++  K A   L   Q++   +P   +  + EL    +   L  
Sbjct: 288  ALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTP-INASFELEAERKWHILTA 346

Query: 1662 MEEMDMKHITNIDWMKYGERCNKYFFNVMKENKSRKWLWAIEDMEGNRKEGQADMASAFV 1841
             EE   +  + I W   G+   KYF  +     S   + A+ D  G   + Q  +     
Sbjct: 347  AEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCA 406

Query: 1842 EYYTRI*GVSSTATCTSQF-LNKLVLNEVDQEMGVQLTAQITGEEIRQALFEMDDNKAPG 2018
             Y+  + G         Q  +N L+          +L +  + E+IR ALF +  NK+ G
Sbjct: 407  SYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCG 466

Query: 2019 PDGFNAFFFKKCWNLVDENFSKAIKHIFEHNCIQKGTNATLICLIPKCISPARVDEFRPI 2198
            PDGF A FF   W++V    + AIK  F   C+ K  NAT I LIPK ++P    +FRPI
Sbjct: 467  PDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPI 526

Query: 2199 ACCNIIYKCVTKILTNRLKVCISSLISCNQSAFVPGRAIQENILLAHELLRGYKRKRRSP 2378
            +C N +YK + ++LT+RL+  +S +IS  QSAF+PGR++ EN+LLA +L+ GY     SP
Sbjct: 527  SCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISP 586

Query: 2379 RCTIKLDIKKAYDSVSWSALELILHRFKFPQAFITWIKMCFTSPSYSILVNGTPEGYFDG 2558
            R  +K+D+KKA+DSV W  +   L     P+ FI WI  C ++P++++ +NG   G+F  
Sbjct: 587  RGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKS 646

Query: 2559 KKGLRQGDPISPYLFVLVMEVLTSLLNQGMSSKAFFPHSKCKQRQLSHLCFADDVLLFCR 2738
             KGLRQGDP+SPYLFVL ME  ++LL+    S     H K     +SHL FADDV++F  
Sbjct: 647  TKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFD 706

Query: 2739 GEPASIHAVKDILSVFPQATGLNLNYAKTTMMTGSMSFEESKELADILGIALISPPVSYL 2918
            G   S+H + + L  F   +GL +N  K+ +    ++  ES   A   G  + + P+ YL
Sbjct: 707  GGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANA-AYGFPIGTLPIRYL 765

Query: 2919 GLPLTSAGLGIKDCLPLIEKIDARISNWKNKSLSRARRLQLVQSVLSSFQTYWAQTFVLP 3098
            GLPL +  L I +  PL+EKI AR  +W NK LS A R+QL+ SV+     +W  TF+LP
Sbjct: 766  GLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLP 825

Query: 3099 KTILERVGKICNRFLWAGRLGQ 3164
            K  ++R+  +C+RFLW+G + Q
Sbjct: 826  KGCIKRIESLCSRFLWSGNIEQ 847



 Score = 82.8 bits (203), Expect(3) = e-137
 Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
 Frame = +2

Query: 659  WNIRGMNDLNKAKDLNSFRRDKKLSCLGLLETKVRRDKYELIMSICCPNWEHMNNYSRDP 838
            WNIRG N+++       + +  K    G++ET V++ K    ++   P W  + NY+   
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 839  SGRIWLAWDPDVLEVVKQVESSQMIHCTVTMLQQARQFKFTVVYASNARAERLCLWEEIS 1018
             G+IW+ WDP V +VV   +S QMI C V +         +VVYA+N  A R  LW EI 
Sbjct: 68   LGKIWVMWDPSV-QVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEIV 126

Query: 1019 ALHYN---LTTPSCVMGDFNNVLLSSE 1090
             +  +      P  V+GDFN VL   E
Sbjct: 127  NMVVSGIIGDRPWLVLGDFNQVLNPQE 153



 Score = 70.1 bits (170), Expect(3) = e-137
 Identities = 33/100 (33%), Positives = 50/100 (50%)
 Frame = +2

Query: 3191 SHATSRLEKEQGGLGILDPLTWNKAAICGLVLKIAQKGDSLWVNWTWGQQIRGRNFWTMK 3370
            S A   L K +GGLG+   L WNK     L+ ++    DSLW +W     +   +FW ++
Sbjct: 854  SWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVE 913

Query: 3371 VPTDSSWVWRGILKHRQLAMKFVKYFIVNGESTSFWHDPW 3490
                 SW W+ +L  R LA +F+   + NG    +W+D W
Sbjct: 914  GGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNW 953


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  384 bits (987), Expect(3) = e-128
 Identities = 236/678 (34%), Positives = 365/678 (53%), Gaps = 13/678 (1%)
 Frame = +3

Query: 1158 LYDHQATGCFFTWTNNG-DGAIRKWSKLDRCLITIYWANQMNTSIVEFLTNVAYSDHSPI 1334
            L D  + G FFTW+N+  D  I +  KLDR L    W     +++  F      SDH+P 
Sbjct: 177  LSDLPSRGVFFTWSNHQQDNPILR--KLDRALANGEWFAVFPSALAVF-DPPGDSDHAPC 233

Query: 1335 MLTLSHVVRP-RPPFRFCNFWSMH*VSGNFIGKLDYAYTREPSL---------HV*KAQA 1484
            ++ + +   P +  F++ +F S H    +++  L  A+     +         H+  A+ 
Sbjct: 234  IILIDNQPPPSKKSFKYFSFLSSH---PSYLAALSTAWEANTLVGSHMFSLRQHLKVAKL 290

Query: 1485 LESSLKQWARVNCSNLQREVKAARLQLNEIQEQLKTNPLDQVAGALELSVRDRLIQLIRM 1664
               +L    R+  SN+Q+    +  +L +IQ +L T+P D +    E   R + I     
Sbjct: 291  CCRTLN---RLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRR-EHVARKQWIFFAAA 346

Query: 1665 EEMDMKHITNIDWMKYGERCNKYFFNVMKENKSRKWLWAIEDMEGNRKEGQADMASAFVE 1844
             E   +  + I W+  G+   ++F   +  +++   +  +   +G R E    +    + 
Sbjct: 347  LESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIA 406

Query: 1845 YYTRI*GVSS--TATCTSQFLNKLVLNEVDQEMGVQLTAQITGEEIRQALFEMDDNKAPG 2018
            YY+ + G+ S      + + +  L+    D  +  QLT   + EEI Q LF M  NKAPG
Sbjct: 407  YYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPG 466

Query: 2019 PDGFNAFFFKKCWNLVDENFSKAIKHIFEHNCIQKGTNATLICLIPKCISPARVDEFRPI 2198
            PDGF   FF + W +V  +   AI+  F    + +G NAT I LIPK     R+ +FRP+
Sbjct: 467  PDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPV 526

Query: 2199 ACCNIIYKCVTKILTNRLKVCISSLISCNQSAFVPGRAIQENILLAHELLRGYKRKRRSP 2378
            ACC  IYK +T+I++ RLK+ I   +  NQ  F+ GR + EN+LLA EL+  ++    + 
Sbjct: 527  ACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETT 586

Query: 2379 RCTIKLDIKKAYDSVSWSALELILHRFKFPQAFITWIKMCFTSPSYSILVNGTPEGYFDG 2558
            R  +++DI KAYD+V+W  L  IL     P  FI WI +C +S SYSI  NG   G+F G
Sbjct: 587  RGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQG 646

Query: 2559 KKGLRQGDPISPYLFVLVMEVLTSLLNQGMSSKAFFPHSKCKQRQLSHLCFADDVLLFCR 2738
            KKG+RQGDP+S +LFVLVM+VL+  L+ G  +  F  H  C    ++HL FADDVL+F  
Sbjct: 647  KKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSD 706

Query: 2739 GEPASIHAVKDILSVFPQATGLNLNYAKTTMMTGSMSFEESKELADILGIALISPPVSYL 2918
            G  +SI  +  IL  F Q +GL +N  KT ++    +F  ++ LAD LGI   S PV YL
Sbjct: 707  GAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYL 766

Query: 2919 GLPLTSAGLGIKDCLPLIEKIDARISNWKNKSLSRARRLQLVQSVLSSFQTYWAQTFVLP 3098
            G+PL S  +  +D  PL+++I++R ++W  + LS A RLQL++SV+ S   +WA  F+ P
Sbjct: 767  GVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFP 826

Query: 3099 KTILERVGKICNRFLWAG 3152
               L+++ ++CN FLW+G
Sbjct: 827  NQCLQKLEQMCNAFLWSG 844



 Score = 89.4 bits (220), Expect(3) = e-128
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 5/175 (2%)
 Frame = +2

Query: 644  VKVCIWNIRGMNDLNKAKDLNSFRRDKKLSCLGLLETKVRRDKYELIMSICCPNWEHMNN 823
            +KV  WNIRG+N  N+ + + S+     L     LET V ++    +++   P W   +N
Sbjct: 1    MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSN 60

Query: 824  YSRDPSGRIWLAWDPDVLEVVKQVESSQMIHCTVTMLQQARQFKFTVVYASNARAERLCL 1003
            Y     GRIW+ WDP +  +V +  + Q++ C++ +    + F    VY  N+  +R  L
Sbjct: 61   YCCSELGRIWIVWDPSISVLVFK-RTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSL 119

Query: 1004 WEEISALHYN---LTTPSCVMGDFNNVLLSSER--IGRDPVHPRETIPFARCLND 1153
            WE+I  L        TP  ++GDFN +  +SE   I +  ++ R       CL D
Sbjct: 120  WEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRD 174



 Score = 36.2 bits (82), Expect(3) = e-128
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 3215 KEQGGLGILDPLTWNKAAICGLVLKIAQKGDSLWVNWTWGQQIRGRNF 3358
            KE GGLG+    +WN+     L+  +     SLWV+W     I  RNF
Sbjct: 863  KEAGGLGLKRLSSWNRILALKLIWLLFTSAGSLWVSWVRLHLIGRRNF 910