BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012540
         (1621 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABQ23585.1| putative KH-domain containing protein [Medicago t...   359   1e-96
ref|XP_003536289.1| PREDICTED: RNA-binding protein Nova-1-like [...   353   6e-95
ref|XP_003556300.1| PREDICTED: RNA-binding protein Nova-1-like [...   352   2e-94
ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [...   346   9e-93
emb|CBI31382.3| unnamed protein product [Vitis vinifera]              346   9e-93

>gb|ABQ23585.1| putative KH-domain containing protein [Medicago truncatula]
          Length = 334

 Score =  359 bits (922), Expect = 1e-96
 Identities = 190/303 (62%), Positives = 235/303 (77%), Gaps = 8/303 (2%)
 Frame = -3

Query: 1229 EDENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLV 1050
            +D  E PT +RFLVSN AAGSVIGKGGSTIT+FQS SGARI LSRNNEFFPGTTDRI++V
Sbjct: 29   QDSVEKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMV 88

Query: 1049 SGPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXKSFM 870
            SG  N++L AVELIL KL++E ++E+ N+ + + KVRLIVPN SC           +SF+
Sbjct: 89   SGAINEVLRAVELILSKLLSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFI 148

Query: 869  KDSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSY 690
            ++SQA IKISPQDN+Y G  DR+VTVTG+L+EQ+R I LI++KLAED +Y HSM++PF+Y
Sbjct: 149  EESQAGIKISPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDPHYSHSMSSPFTY 208

Query: 689  AGV---NFSSLPYGYMAPSVGILARNG----RNGSGG-FQNNKEDRSNSVTIGVADEHXX 534
            +G     +  +PY Y+ PSV   A NG     NG+G  FQN+KEDRSNS+TIGVADEH  
Sbjct: 209  SGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRPNGTGAKFQNSKEDRSNSMTIGVADEHIG 268

Query: 533  XXXXXXXRNLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAY 354
                   RN+ DI+QTSGA+IKISDRGD+ISGT++RKV ITGSQ AIRTAE+MI+QKVAY
Sbjct: 269  LVVGRGGRNISDISQTSGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAESMILQKVAY 328

Query: 353  ATE 345
            ATE
Sbjct: 329  ATE 331


>ref|XP_003536289.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
          Length = 337

 Score =  353 bits (907), Expect = 6e-95
 Identities = 189/303 (62%), Positives = 229/303 (75%), Gaps = 9/303 (2%)
 Frame = -3

Query: 1226 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 1047
            D  E PT IRFLVSN AAGSVIGKGGSTIT+FQS SGARI LSRN+EFFPGTTDRI++VS
Sbjct: 30   DSEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVS 89

Query: 1046 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXKSFMK 867
            G  N+I  AVELIL KL++E ++E+ N+ + + KVRL+VPN SC           +SF++
Sbjct: 90   GAINEIQRAVELILSKLLSELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGGATIRSFIE 149

Query: 866  DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 687
            DSQA IKISPQDNNY G  DRLVT+TGS +EQ+RAI LI++KL+ED +Y  SMN+PFSY 
Sbjct: 150  DSQAGIKISPQDNNYYGQNDRLVTLTGSFDEQMRAIELIVSKLSEDPHYAQSMNSPFSYP 209

Query: 686  GVNFS---SLPYGYMAPSVGILARNGRN------GSGGFQNNKEDRSNSVTIGVADEHXX 534
            GV FS    +PY Y+ PSV   A N  N        G  QN+KE+RSNS+T+GVADEH  
Sbjct: 210  GVYFSGYQGVPYTYVLPSVAPPAYNAVNYRPNGAAGGKLQNSKEERSNSLTMGVADEHIG 269

Query: 533  XXXXXXXRNLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAY 354
                   RN+M+I+Q SGARIKISDRGD++SGT++RKV ITGSQ AIRTAE+MI+QKVAY
Sbjct: 270  LVVGRGGRNIMEISQASGARIKISDRGDYVSGTTDRKVTITGSQRAIRTAESMILQKVAY 329

Query: 353  ATE 345
            ATE
Sbjct: 330  ATE 332



 Score = 65.5 bits (158), Expect = 4e-08
 Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = -3

Query: 1229 EDEN--EGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIV 1056
            ED+N  E  T++R +V NG+ G +IGKGG+TI  F   S A I +S  +  + G  DR+V
Sbjct: 113  EDDNDAEPKTKVRLVVPNGSCGGIIGKGGATIRSFIEDSQAGIKISPQDNNYYGQNDRLV 172

Query: 1055 LVSGPFNDILHAVELILGKLVAEGNAEES 969
             ++G F++ + A+ELI+ KL  + +  +S
Sbjct: 173  TLTGSFDEQMRAIELIVSKLSEDPHYAQS 201


>ref|XP_003556300.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
          Length = 337

 Score =  352 bits (902), Expect = 2e-94
 Identities = 189/303 (62%), Positives = 228/303 (75%), Gaps = 9/303 (2%)
 Frame = -3

Query: 1226 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 1047
            D  E PT IRFLVSN AAGSVIGKGGSTIT+FQS SGARI LSRN+EFFPGTTDRI++VS
Sbjct: 30   DSEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVS 89

Query: 1046 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXKSFMK 867
            G  N+I  AVELIL KL++E ++E+ N+ + + KVRL+VPN SC           +SF++
Sbjct: 90   GAINEIQRAVELILSKLLSELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGGVTIRSFIE 149

Query: 866  DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 687
            DSQA IKISPQDNNY G  DRLV +TG+ +EQ+RAI LI++KLAED +Y  SMN+PFSY 
Sbjct: 150  DSQAGIKISPQDNNYYGQNDRLVMLTGTFDEQMRAIELIVSKLAEDPHYAQSMNSPFSYP 209

Query: 686  GVNFS---SLPYGYMAPSVGILARNGRN------GSGGFQNNKEDRSNSVTIGVADEHXX 534
            GV FS    +PY Y+ PSV   A N  N        G  QN+KE+RSNS+T+GVADEH  
Sbjct: 210  GVYFSGYQGVPYTYVLPSVAPPAYNAVNYRPNGTAGGKLQNSKEERSNSLTMGVADEHIG 269

Query: 533  XXXXXXXRNLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAY 354
                   RN+M+I+Q SGARIKISDRGD+ISGT++RKV ITGSQ AIRTAE+MI+QKVAY
Sbjct: 270  LVVGRGGRNIMEISQVSGARIKISDRGDYISGTTDRKVTITGSQRAIRTAESMILQKVAY 329

Query: 353  ATE 345
            ATE
Sbjct: 330  ATE 332



 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = -3

Query: 1229 EDEN--EGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIV 1056
            ED+N  E  T++R +V NG+ G +IGKGG TI  F   S A I +S  +  + G  DR+V
Sbjct: 113  EDDNDAEPKTKVRLVVPNGSCGGIIGKGGVTIRSFIEDSQAGIKISPQDNNYYGQNDRLV 172

Query: 1055 LVSGPFNDILHAVELILGKLVAEGNAEES 969
            +++G F++ + A+ELI+ KL  + +  +S
Sbjct: 173  MLTGTFDEQMRAIELIVSKLAEDPHYAQS 201


>ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera]
          Length = 309

 Score =  346 bits (888), Expect = 9e-93
 Identities = 193/295 (65%), Positives = 225/295 (76%), Gaps = 1/295 (0%)
 Frame = -3

Query: 1226 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 1047
            D  E  T IRFLVSN AAGSVIGKGGSTI +FQS SGARI LSRN+EFFPGT+DRI+++S
Sbjct: 28   DFMEKSTYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTSDRIIMIS 87

Query: 1046 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXKSFMK 867
            G  N+I+ A+ELIL KL++E + E+ +E D R+KVRLIVPNSSC           KSF++
Sbjct: 88   GATNEIIKAMELILAKLLSEMHTEDGDEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIE 147

Query: 866  DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 687
            DSQASIKISPQDNNY GLTDRLVT+ GSLEEQ+RAI LIL+KL ED +Y   MNAPFSYA
Sbjct: 148  DSQASIKISPQDNNYLGLTDRLVTLMGSLEEQMRAIDLILSKLTEDPHYTQFMNAPFSYA 207

Query: 686  GVNFSSLPYGYMAPSVGILARNGRNGSGG-FQNNKEDRSNSVTIGVADEHXXXXXXXXXR 510
               ++S+ Y             G NG+GG FQNNKEDRSNSVTIGVADEH         R
Sbjct: 208  AA-YNSMNY-------------GPNGAGGKFQNNKEDRSNSVTIGVADEHIGLVVGRGGR 253

Query: 509  NLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAYATE 345
            N+MDI+Q SGARIKISDRGDF+SGT++RKV ITGSQ AIR AE+MIMQKVA A+E
Sbjct: 254  NIMDISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMIMQKVASASE 308


>emb|CBI31382.3| unnamed protein product [Vitis vinifera]
          Length = 357

 Score =  346 bits (888), Expect = 9e-93
 Identities = 193/295 (65%), Positives = 225/295 (76%), Gaps = 1/295 (0%)
 Frame = -3

Query: 1226 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 1047
            D  E  T IRFLVSN AAGSVIGKGGSTI +FQS SGARI LSRN+EFFPGT+DRI+++S
Sbjct: 76   DFMEKSTYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTSDRIIMIS 135

Query: 1046 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXKSFMK 867
            G  N+I+ A+ELIL KL++E + E+ +E D R+KVRLIVPNSSC           KSF++
Sbjct: 136  GATNEIIKAMELILAKLLSEMHTEDGDEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIE 195

Query: 866  DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 687
            DSQASIKISPQDNNY GLTDRLVT+ GSLEEQ+RAI LIL+KL ED +Y   MNAPFSYA
Sbjct: 196  DSQASIKISPQDNNYLGLTDRLVTLMGSLEEQMRAIDLILSKLTEDPHYTQFMNAPFSYA 255

Query: 686  GVNFSSLPYGYMAPSVGILARNGRNGSGG-FQNNKEDRSNSVTIGVADEHXXXXXXXXXR 510
               ++S+ Y             G NG+GG FQNNKEDRSNSVTIGVADEH         R
Sbjct: 256  AA-YNSMNY-------------GPNGAGGKFQNNKEDRSNSVTIGVADEHIGLVVGRGGR 301

Query: 509  NLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAYATE 345
            N+MDI+Q SGARIKISDRGDF+SGT++RKV ITGSQ AIR AE+MIMQKVA A+E
Sbjct: 302  NIMDISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMIMQKVASASE 356