BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012498
         (566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c...   109   4e-22
ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi...   109   4e-22
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab...   108   5e-22
ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl...   105   7e-21
ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloropl...    96   3e-18

>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
           Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
           protein 6; Short=PSRP-6; Flags: Precursor
           gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
           ribosomal protein 6 precursor [Spinacia oleracea]
          Length = 116

 Score =  109 bits (272), Expect = 4e-22
 Identities = 54/91 (59%), Positives = 63/91 (69%), Gaps = 10/91 (10%)
 Frame = +3

Query: 66  SISALFGTRVVLKPNLAQFSS----------STLGERGAATAVIECSSRPQKKGTKHHMK 215
           S+SA+FG RVV  P++ + SS          ST G  G     IECSSRPQKKGT HHMK
Sbjct: 2   SVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMK 61

Query: 216 TRPKKTAKWEIKRRPTVYAPLPPLPSEWSFV 308
           TRPKKTA+W+IKR P VY PLPPLP+EW+ V
Sbjct: 62  TRPKKTARWDIKRGPAVYPPLPPLPAEWTIV 92


>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
           gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
           ribosomal protein 6, chloroplastic; AltName: Full=CL25;
           AltName: Full=Plastid-specific 50S ribosomal protein 6;
           Short=PSRP-6; Flags: Precursor
           gi|10177888|dbj|BAB11220.1| unnamed protein product
           [Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
           AT5g17870/MPI7_10 [Arabidopsis thaliana]
           gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
           [Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
           plastid-specific ribosomal protein 6 precursor
           (Psrp-6)-like [Arabidopsis thaliana]
           gi|332005097|gb|AED92480.1| plastid-specific 50S
           ribosomal protein 6 [Arabidopsis thaliana]
          Length = 106

 Score =  109 bits (272), Expect = 4e-22
 Identities = 53/82 (64%), Positives = 59/82 (71%), Gaps = 3/82 (3%)
 Frame = +3

Query: 66  SISALFGTRVVL---KPNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKTA 236
           S+SA+FGT +V     P L QF    LG  G    VIECSSRPQKK T HH KTRPKKT 
Sbjct: 2   SVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQ 61

Query: 237 KWEIKRRPTVYAPLPPLPSEWS 302
            W+IKR+PTVYAPLPPLP+EWS
Sbjct: 62  PWDIKRKPTVYAPLPPLPAEWS 83


>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
           lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
           ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
          Length = 108

 Score =  108 bits (271), Expect = 5e-22
 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
 Frame = +3

Query: 66  SISALFGTRVVL---KPNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKTA 236
           S+SA+FGT +V     P L QF   TLG  G    VIECSSRPQKK T HH K+RPKKT 
Sbjct: 2   SVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKTQ 61

Query: 237 KWEIKRRPTVYAPLPPLPSEWS 302
            W+IKR+PTVYAPLPPLP+EW+
Sbjct: 62  PWDIKRKPTVYAPLPPLPAEWT 83


>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
          Length = 108

 Score =  105 bits (261), Expect = 7e-21
 Identities = 53/83 (63%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
 Frame = +3

Query: 66  SISALFGTRVVLK-PNLAQFSSSTLGER-GAATAVIECSSRPQKKGTKHHMKTRPKKTAK 239
           SISA+FG  V  +    A F +     R G   AVIECSSRPQKKGT HHMKTRP+KT  
Sbjct: 2   SISAIFGAAVPNRCSTAASFGARKAAPRLGGGAAVIECSSRPQKKGTSHHMKTRPRKTQP 61

Query: 240 WEIKRRPTVYAPLPPLPSEWSFV 308
           W+IKRRPTVYAPLPPLP EW+ V
Sbjct: 62  WDIKRRPTVYAPLPPLPPEWTVV 84


>ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like
           [Brachypodium distachyon]
          Length = 118

 Score = 96.3 bits (238), Expect = 3e-18
 Identities = 42/68 (61%), Positives = 49/68 (72%)
 Frame = +3

Query: 105 PNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKTAKWEIKRRPTVYAPLPP 284
           P  A+ S+   G  G     +ECSSRPQKKGTKHHMKTRPKKT +W+IKRRPT Y PLP 
Sbjct: 18  PRTARPSAGFFGVGGGCALTVECSSRPQKKGTKHHMKTRPKKTQRWDIKRRPTQYPPLPA 77

Query: 285 LPSEWSFV 308
           LP +W+ V
Sbjct: 78  LPEDWTLV 85