BLASTX nr result
ID: Coptis23_contig00012439
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00012439
(686 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vi... 182 1e-63
emb|CAN64562.1| hypothetical protein VITISV_038233 [Vitis vinifera] 180 4e-63
ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis... 174 9e-63
ref|XP_003522812.1| PREDICTED: tRNA modification GTPase MnmE-lik... 173 3e-62
ref|XP_003527915.1| PREDICTED: tRNA modification GTPase MnmE-lik... 170 1e-61
>ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera]
gi|302141924|emb|CBI19127.3| unnamed protein product
[Vitis vinifera]
Length = 571
Score = 182 bits (461), Expect(2) = 1e-63
Identities = 90/106 (84%), Positives = 96/106 (90%)
Frame = +1
Query: 232 FNKHVLTCAVNGQGIPDLESALIEIAGLDRIPAGGRRWAVNQRQFEQLVRTKEALMRLKS 411
F+KH+ TCAV GQGI DLESA+IEI GL++IPAGGRRW VNQRQ EQLVRTKEAL RL S
Sbjct: 466 FSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCEQLVRTKEALARLIS 525
Query: 412 SIEEEMPLDFWTIDLREAALALAQISGEDISEEVLSNIFSKFCIGK 549
SIEEEMPLDFWTIDLREAALAL QISGEDISEEVL+NIF KFCIGK
Sbjct: 526 SIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIGK 571
Score = 87.8 bits (216), Expect(2) = 1e-63
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = +2
Query: 2 IGVERSEAVAMGADVIIMTVSAMDGWTSDDAELLERIQVNQEITGSSAPMILVINKIDCA 181
IGVERSEAVA+ ADVIIMT+SA+DGWTS D +L RI N++ SS P+ILV+NKIDCA
Sbjct: 393 IGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVNKIDCA 452
Query: 182 P 184
P
Sbjct: 453 P 453
>emb|CAN64562.1| hypothetical protein VITISV_038233 [Vitis vinifera]
Length = 434
Score = 180 bits (456), Expect(2) = 4e-63
Identities = 89/105 (84%), Positives = 95/105 (90%)
Frame = +1
Query: 232 FNKHVLTCAVNGQGIPDLESALIEIAGLDRIPAGGRRWAVNQRQFEQLVRTKEALMRLKS 411
F+KH+ TCAV GQGI DLESA+IEI GL++IPAGGRRW VNQRQ EQLVRTKEAL RL S
Sbjct: 303 FSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCEQLVRTKEALARLIS 362
Query: 412 SIEEEMPLDFWTIDLREAALALAQISGEDISEEVLSNIFSKFCIG 546
SIEEEMPLDFWTIDLREAALAL QISGEDISEEVL+NIF KFCIG
Sbjct: 363 SIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIG 407
Score = 87.8 bits (216), Expect(2) = 4e-63
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = +2
Query: 2 IGVERSEAVAMGADVIIMTVSAMDGWTSDDAELLERIQVNQEITGSSAPMILVINKIDCA 181
IGVERSEAVA+ ADVIIMT+SA+DGWTS D +L RI N++ SS P+ILV+NKIDCA
Sbjct: 230 IGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVNKIDCA 289
Query: 182 P 184
P
Sbjct: 290 P 290
>ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis]
gi|223546964|gb|EEF48461.1| gtpase mss1/trme, putative
[Ricinus communis]
Length = 557
Score = 174 bits (440), Expect(2) = 9e-63
Identities = 86/118 (72%), Positives = 99/118 (83%)
Frame = +1
Query: 196 VAVETLKRVVTPFNKHVLTCAVNGQGIPDLESALIEIAGLDRIPAGGRRWAVNQRQFEQL 375
+++E + R F+KHV TCAV GQGI +LE A+ EI GL+RIP GGR+W VNQRQ EQL
Sbjct: 440 LSMEWIGRYSKAFSKHVFTCAVTGQGIKELEMAISEIVGLNRIPTGGRKWTVNQRQCEQL 499
Query: 376 VRTKEALMRLKSSIEEEMPLDFWTIDLREAALALAQISGEDISEEVLSNIFSKFCIGK 549
+RTKEAL RLKSSI++EMPLDFWTIDLR+AALAL QISGE ISEEVLSNIF KFCIGK
Sbjct: 500 MRTKEALARLKSSIKDEMPLDFWTIDLRDAALALGQISGEGISEEVLSNIFGKFCIGK 557
Score = 92.8 bits (229), Expect(2) = 9e-63
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +2
Query: 2 IGVERSEAVAMGADVIIMTVSAMDGWTSDDAELLERIQVNQEITGSSAPMILVINKIDCA 181
IGVERSEAVAMGADVII+T+SA DGWTS+D+ELL RI+ N++ GSS P++L INKID A
Sbjct: 378 IGVERSEAVAMGADVIILTISAFDGWTSEDSELLSRIESNKKSVGSSTPVVLAINKIDTA 437
Query: 182 P 184
P
Sbjct: 438 P 438
>ref|XP_003522812.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max]
Length = 520
Score = 173 bits (439), Expect(2) = 3e-62
Identities = 83/106 (78%), Positives = 96/106 (90%)
Frame = +1
Query: 232 FNKHVLTCAVNGQGIPDLESALIEIAGLDRIPAGGRRWAVNQRQFEQLVRTKEALMRLKS 411
F+KHV TCAV GQG+ DLE A+++I GL+ IPAGGRRW VNQRQ EQLVRTKEAL+RL+S
Sbjct: 415 FSKHVFTCAVTGQGLHDLEGAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALVRLQS 474
Query: 412 SIEEEMPLDFWTIDLREAALALAQISGEDISEEVLSNIFSKFCIGK 549
SI++E+PLDFWTIDLR+AAL+L QISGEDISEEVLSNIF KFCIGK
Sbjct: 475 SIKDELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK 520
Score = 91.7 bits (226), Expect(2) = 3e-62
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +2
Query: 2 IGVERSEAVAMGADVIIMTVSAMDGWTSDDAELLERIQVNQEITGSSAPMILVINKIDCA 181
IGVERSEAVA GAD+IIMT+SA++GWTS+D +LLERIQ + TGSS P+ILV+NKIDC
Sbjct: 340 IGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCK 399
Query: 182 P 184
P
Sbjct: 400 P 400
>ref|XP_003527915.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max]
Length = 548
Score = 170 bits (431), Expect(2) = 1e-61
Identities = 83/106 (78%), Positives = 94/106 (88%)
Frame = +1
Query: 232 FNKHVLTCAVNGQGIPDLESALIEIAGLDRIPAGGRRWAVNQRQFEQLVRTKEALMRLKS 411
F+K V TCAV GQG+ DLE A+++I GL+ IPAGGRRW VNQRQ EQLVRTKEAL RL+S
Sbjct: 443 FSKRVFTCAVTGQGLHDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQS 502
Query: 412 SIEEEMPLDFWTIDLREAALALAQISGEDISEEVLSNIFSKFCIGK 549
SI+EE+PLDFWTIDLR+AAL+L QISGEDISEEVLSNIF KFCIGK
Sbjct: 503 SIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK 548
Score = 92.8 bits (229), Expect(2) = 1e-61
Identities = 45/61 (73%), Positives = 53/61 (86%)
Frame = +2
Query: 2 IGVERSEAVAMGADVIIMTVSAMDGWTSDDAELLERIQVNQEITGSSAPMILVINKIDCA 181
IGVERSEAVA GAD+IIMTVSA++GWTS+D +LLERIQ + TGSS P+ILV+NKIDC
Sbjct: 368 IGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCK 427
Query: 182 P 184
P
Sbjct: 428 P 428